Gene detail

Detailed information of OS493_016149-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1271549...1284679
NR annotation: KAJ7391859.1, hypothetical protein OS493_016149 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004521 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21002 all species →	TMEM106_N	Transmembrane protein 106 N-terminal region	Family	Interproscan
PF07092 all species →	TMEM106	TM106 protein C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048511 all species →	Domain	Transmembrane protein 106, N-terminal	Interproscan
IPR048509 all species →	Domain	Transmembrane protein 106, C-terminal domain	Interproscan
IPR009790 all species →	Family	Transmembrane protein 106	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28556 all species →	TRANSMEMBRANE PROTEIN 106B	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_016149-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25048	TMEM106B; transmembrane protein 106B	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016149-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

31.6Max TPM

9.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.61	9.37
polyp at pH7 6	18	18	7.39	11.98
coral polyp · control treatment	16	16	14.14	31.62
coral polyp · oil and dispersant treatment	16	16	14.06	28.04
coral polyp · oil treatment	16	16	10.91	20.25
coral polyp · dispersant treatment	16	16	9.78	30.93
Polyp	10	8	6.01	15.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.37
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.99
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.91
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.13
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.87
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.63
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.83
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.67
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.59
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.62
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.99
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.89
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.69
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.66
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.80
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.55
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.73
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.70
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.64
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.09
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.50
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.60
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.93
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.59
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.70
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.37
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.16
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.11
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.08
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.89
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.51
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.39
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.92
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.