Gene detail

Detailed information of OS493_016171-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1469390...1475955
NR annotation: KAJ7391881.1, hypothetical protein OS493_016171 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08539	Myc box-dependent-interacting protein 1 OS=Mus musculus OX=10090 GN=Bin1 PE=1 SV=1
O08839	Myc box-dependent-interacting protein 1 OS=Rattus norvegicus OX=10116 GN=Bin1 PE=1 SV=1
O00499	Myc box-dependent-interacting protein 1 OS=Homo sapiens OX=9606 GN=BIN1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005452 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan
PF03114 all species →	BAR	BAR domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR027267 all species →	Homologous_superfamily	AH/BAR domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan
IPR003005 all species →	Family	Amphiphysin	Interproscan
IPR004148 all species →	Domain	BAR domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46514 all species →	AMPHIPHYSIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005543 all species →	Molecular Function	phospholipid binding	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12562	AMPH; amphiphysin	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016171-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

33.2Max TPM

10.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.04	14.87
polyp at pH7 6	18	18	10.11	13.83
coral polyp · control treatment	16	16	13.82	33.20
coral polyp · oil and dispersant treatment	16	16	12.56	21.77
coral polyp · oil treatment	16	16	12.39	21.49
coral polyp · dispersant treatment	16	16	8.35	14.15
Polyp	10	10	6.24	12.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.87
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.64
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.62
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.22
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.39
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.61
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.69
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.73
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.83
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.87
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.62
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.29
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.15
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.22
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.18
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.08
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.12
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.09
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.27
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.51
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.42
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.34
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.62
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.59
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.56
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.63
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.23
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.30
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.45
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.95
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.15
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.61
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.17
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.93
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.34
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.68
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.97
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.18
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.23
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.93
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.65
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.10

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.