Detailed information of OS493_016186-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1600337...1602622
NR annotation: KAJ7391890.1, Homeobox protein Hox-D3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9YGT4Homeobox protein Hox-B6b OS=Danio rerio OX=7955 GN=hoxb6b PE=2 SV=2
Q9IA23Homeobox protein Hox-A5 OS=Heterodontus francisci OX=7792 GN=HOXA5 PE=3 SV=1
Q8AWY9Homeobox protein Hox-B7a OS=Danio rerio OX=7955 GN=hoxb7a PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000082 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR020479
all species →		DomainHomeobox domain, metazoaInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR001827
all species →		Conserved_siteHomeobox protein, antennapedia type, conserved siteInterproscan
IPR000047
all species →		Conserved_siteHelix-turn-helix motifInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45664
all species →		PROTEIN ZERKNUELLT 1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_016186-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_016186-T1 global co-expression network
TOP