Gene detail

Detailed information of OS493_016205-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1742830...1747041
NR annotation: KAJ7391909.1, hypothetical protein OS493_016205 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
F1R4U0	Tricarboxylate transport protein B, mitochondrial OS=Danio rerio OX=7955 GN=slc25a1b PE=3 SV=2
P32089	Tricarboxylate transport protein, mitochondrial OS=Rattus norvegicus OX=10116 GN=Slc25a1 PE=1 SV=1
P53007	Tricarboxylate transport protein, mitochondrial OS=Homo sapiens OX=9606 GN=SLC25A1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008244 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR049563 all species →	Family	Tricarboxylate transport protein-like	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45788 all species →	SUCCINATE/FUMARATE MITOCHONDRIAL TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006843 all species →	Biological Process	mitochondrial citrate transmembrane transport	Interproscan
GO:0071913 all species →	Molecular Function	citrate secondary active transmembrane transporter activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15100	SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016205-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

50.2Max TPM

12.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.02	19.01
polyp at pH7 6	18	18	10.85	17.11
coral polyp · control treatment	16	16	11.16	21.96
coral polyp · oil and dispersant treatment	16	16	8.97	20.71
coral polyp · oil treatment	16	16	7.85	15.88
coral polyp · dispersant treatment	16	16	23.40	50.19
Polyp	10	10	12.36	21.54

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.01
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.60
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.79
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.70
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.83
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.15
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.70
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.07
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.67
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.93
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.94
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.30
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.48
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.30
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.96
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.68
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.24
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.44
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.79
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.17
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.74
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.71
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.88
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.91
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.65
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.38
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.88
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.52
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.38
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.34
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.17
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.24
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.33
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.19
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.19
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.88
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.71
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.18
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.25
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.74
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.57
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.49
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.91
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.67
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.54
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	14.22
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	13.22
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	10.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.32
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.77
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.21
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	6.97

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.