Gene detail

Detailed information of OS493_016208-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1847755...1849570
NR annotation: KAJ7391911.1, inositol-1,4-bisphosphate 1-phosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P49442	Inositol polyphosphate 1-phosphatase OS=Mus musculus OX=10090 GN=Inpp1 PE=1 SV=2
P49441	Inositol polyphosphate 1-phosphatase OS=Homo sapiens OX=9606 GN=INPP1 PE=1 SV=1
P21327	Inositol polyphosphate 1-phosphatase OS=Bos taurus OX=9913 GN=INPP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010385 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00459 all species →	Inositol_P	Inositol monophosphatase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR044897 all species →	Homologous_superfamily	Inositol polyphosphate 1-phosphatase, domain 1	Interproscan
IPR020583 all species →	Binding_site	Inositol monophosphatase, metal-binding site	Interproscan
IPR050725 all species →	Family	CysQ/Inositol Monophosphatase	Interproscan
IPR000760 all species →	Family	Inositol monophosphatase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43028 all species →	3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004441 all species →	Molecular Function	inositol-1,4-bisphosphate 1-phosphatase activity	Interproscan
GO:0046855 all species →	Biological Process	obsolete inositol phosphate dephosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01107	INPP1; inositol polyphosphate 1-phosphatase	EC:3.1.3.57	Phosphatidylinositol signaling system	ko04070	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016208-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

20.8Max TPM

8.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.67	13.10
polyp at pH7 6	18	18	7.68	16.88
coral polyp · control treatment	16	16	12.38	20.43
coral polyp · oil and dispersant treatment	16	16	9.71	15.62
coral polyp · oil treatment	16	16	14.41	20.85
coral polyp · dispersant treatment	16	16	5.72	11.84
Polyp	10	9	3.98	7.29

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.10
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.45
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.04
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.38
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.71
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.13
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.59
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.75
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.88
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.05
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.65
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.66
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.43
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.40
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.32
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.31
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.56
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.34
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.10
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.87
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.12
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.55
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.59
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.13
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.17
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.63
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.51
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.29
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.25
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.56
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.84
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.88
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.92
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.36
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.12
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.29
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.65
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.57
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.