Gene detail

Detailed information of OS493_016212-T1 in Lophelia pertusa

Genomic Location: scaffold_49:1876875...1878783
NR annotation: KAJ7391915.1, WD repeat-containing protein 24 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7ZX22	GATOR2 complex protein WDR24 OS=Xenopus laevis OX=8355 GN=wdr24 PE=2 SV=1
Q5ZMV9	GATOR2 complex protein WDR24 OS=Gallus gallus OX=9031 GN=WDR24 PE=2 SV=1
Q96S15	GATOR2 complex protein WDR24 OS=Homo sapiens OX=9606 GN=WDR24 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005529 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17120 all species →	zf-RING_16	RING/Ubox like zinc-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR049566 all species →	Domain	WDR59/RTC1-like, RING zinc finger domain	Interproscan
IPR037590 all species →	Family	GATOR2 complex protein WDR24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46200 all species →	GATOR COMPLEX PROTEIN WDR24	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005774 all species →	Cellular Component	vacuolar membrane	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0016239 all species →	Biological Process	positive regulation of macroautophagy	Interproscan
GO:0032008 all species →	Biological Process	positive regulation of TOR signaling	Interproscan
GO:0034198 all species →	Biological Process	cellular response to amino acid starvation	Interproscan
GO:0061700 all species →	Cellular Component	GATOR2 complex	Interproscan
GO:1904263 all species →	Biological Process	positive regulation of TORC1 signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016212-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016212-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

55.9Max TPM

21.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.85	39.78
polyp at pH7 6	18	18	23.29	36.81
coral polyp · control treatment	16	16	24.64	53.30
coral polyp · oil and dispersant treatment	16	16	13.37	32.22
coral polyp · oil treatment	16	16	23.67	48.67
coral polyp · dispersant treatment	16	16	12.99	25.03
Polyp	10	9	24.82	55.89

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.33
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.26
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.75
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.92
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.29
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.28
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.82
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.20
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.14
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.26
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.25
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.39
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.20
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.74
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.03
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.35
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.67
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.27
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.57
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.22
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.09
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.40
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.33
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.47
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.06
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.87
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.73
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.56
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.43
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.14
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.82
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.50
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.64
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.80
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.03
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.49
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.15
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.27
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	55.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	55.57
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.95
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.96
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.96
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.