Gene detail

Detailed information of OS493_016261-T1 in Lophelia pertusa

Genomic Location: scaffold_49:2194560...2209075
NR annotation: KAJ7391954.1, SH3/SH2 adaptor [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_016261-T1

ATGGCCTCAGCTTCTCAGGGTGATTGCAGCAGCAATGATCCGACAGATATCAGTCAGGTCTTGGAGAGTTTAGGGAGTTTGATTGGGGAGTTAGATGCCATAGAAGTTGACGAGAAGGCCATTCACAATGAAGTGGAAAATACTCAAAATTTTGATTTGCATTTGGAAACTCTTCTAGCCGACACAGACGAGTTTAATGATGAGCATGAGTATCTCATTCCTCGTCAAAACTCACCGGTACAGAAACCACCATCTCCAGGCCACATCAATCACAAAACTCAACAAAACCCATGCTTCAAATCTGCCGCACAAGGACACGAAAGAGGCTCAACGTGTTTTGATTCACTTGGCGAGGGCTCCGTGGGTTGCGCAGGTGCTAAAGCAAGAAGTTCGTCTCACCCTCTCCCCCCACGATCACACAATGTCAGCTCTACTGCCTCTTTAAGGACACAGGAACACGACTATGCCATTCCGCCGAGCAGGAGTTGGACACAGGAACACGACTATGCCATTCCGCCGAGCAGGAGTAGGACACAGGAACACGACTATGACATGCCACCGAGCAGGAGTAGGACACAGGAACACGACTATGCCGTGCCGCCGAGCAGGAGTAGTAGTCATAAAGGTGCTTTCAAGGAAGTTGCTCTAAGTGTGGAGCTGCATGGAAGCTTCAAAAAAGTTGGTGAAGGATCATCGACAGTTGCAGCTCAGAAGACTACTACGCATACTCCCGCTGCACATACCAAAGCACAGCCTAATCATTATGTTGCACCCAGTGAACTTGGTTTTCACAAACCCAGTCATGGTAATATGAAGCCAGGTACTACGACAAATGGCATGCTTCACAGCACACGCAGTCAACAAGTAAAGCATGGGACACAGCAAGTACCAGTGACAGTTTTTAATGAGGATGACAACCCTGTTGGATTATTAGTTTCGTCCAACATGAAGGCCAGGGAAGCATGTCACAAGCTAGCAATGATAAACAAGGTTGATGACGACCCTCACTGGGTGTTAGCTGAATATCTGACTGACTTAGGGCTTGAACGTAATTTAGAGGATCATGAAAACATCATGGCCATCTTGAACACATGGGCACCTGGTTCAAACAACAAGTTATTGTTTAGAAAGGACTCGAAAAAATACCACTTCTTCTCTCATACATCTAATTATTTTCCTCCTCATTTGTTGGACTCTGAAAATGCAGACAAGGCAGTGACAGAGAAAGCTCAGAAGGCCAAGACAATCTTACAGCAGAAACTGTTCAGCACCTGTACCAGAGTTCCTGAAATAGAAGGCACTTTACATTGTAAGGATTTTGGAAAGAAGTCTTGGAATAAGAAATTCGTTTTCTTGAGAGGATCAGGGCTTTATTCCTCCAGTAAAGGGAAGTCAAAGGCTTCTAAAGATTTGGAATGTTACGTTCAATTTGATGGAGCAAACCTCTACAACATCCTGAATCCTAAAAAGGCTCACAAGTCACCAGCAGAATTCTGCTTTTGTATTGTGCCTTACAGAGCGCGAGAACTCAAGGAACTCAAGTGTCTGTGCACAGATGACGAGAAAACATTGATGAGCTGGATAATGGCTGTCAGGCTAGCCAAGTTCGGACCGCAACTCCGACAAAATTACGACGACATGATACGAAAGTTTGCGAAGCTTACCAAGTATCGCGAACAGACCTCCGCGGACAGCCAGAACGTTATAAGCGATAAGGAAGAAGGCGAGTTTAAACTAATGACCAAGGAGGGTCAGGTAGCGATGGATTTTACTGGCGAAAGAGGAAAAGTCATAACAGATGTTAAAGAAATTCAACAACTGGCCAACACAAGACACAAAGTGAAATTAAGTCGTCGAGTTTCATCCCAGCACTTCATACCCACAGACACTACTGTTTCAGGGCACCACTTTGTGAACGAACCATGGTACCATGGACGGATTACAAGGGAGCACTCGCTCGAGCTACTTGTGGCTGCGGGAGTGATGGACGGGTTGTTCCTTGTTCGTGAGAGCAGCAGTGTGACTGGAGTGTTTGTGTTAACATTTTGCATGAACAGAAAAGTCTACCACTGTCAGCTGGTACAGGACATTGGCGAAGGTACCAAAACGTTCTTTAACCTCGGTAAAGGTCCAGCGTTTGAAACTCTGCATCAGCTCATCGCCTTTTACCAACAGAAACCATTAAATGGTGTCTCTCTTGCCTTGAGGACACCGTGTCCCAAAAAAGGATAA

Transcript

OS493_016261-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ICW4	Growth factor receptor-bound protein 14 OS=Bos taurus OX=9913 GN=GRB14 PE=1 SV=1
Q14449	Growth factor receptor-bound protein 14 OS=Homo sapiens OX=9606 GN=GRB14 PE=1 SV=2
B5KFD7	Growth factor receptor-bound protein 10 OS=Sus scrofa OX=9823 GN=Grb10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004537 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR039664 all species →	Family	GRB/APBB1IP	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR039665 all species →	Domain	APBB1IP, PH domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11243 all species →	GROWTH FACTOR RECEPTOR-BOUND PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016261-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_016261-T1 global co-expression network