Gene detail

Detailed information of OS493_016281-T1 in Lophelia pertusa

Genomic Location: scaffold_49:2413899...2418266
NR annotation: KAJ7391973.1, G patch domain-containing protein 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UKJ3	G patch domain-containing protein 8 OS=Homo sapiens OX=9606 GN=GPATCH8 PE=1 SV=2
A2A6A1	G patch domain-containing protein 8 OS=Mus musculus OX=10090 GN=Gpatch8 PE=1 SV=1
A2AKY4	Zinc finger protein 804A OS=Mus musculus OX=10090 GN=Znf804a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007937 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01585 all species →	G-patch	G-patch domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000467 all species →	Domain	G-patch domain	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47251 all species →	FINGER DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G04180)-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016281-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016281-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

35.5Max TPM

11.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.91	32.00
polyp at pH7 6	18	18	14.17	35.54
coral polyp · control treatment	16	16	12.44	21.08
coral polyp · oil and dispersant treatment	16	16	9.01	15.43
coral polyp · oil treatment	16	16	12.17	17.04
coral polyp · dispersant treatment	16	16	5.09	11.78
Polyp	10	10	15.51	32.41

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.23
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.43
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.64
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.62
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.30
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.54
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.16
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.01
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.68
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.63
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.25
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.92
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.34
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.43
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.56
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.31
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.04
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.76
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.66
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.63
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.92
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.04
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.25
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.59
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.46
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.12
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.01
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.55
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.98
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.95
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.42
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.72
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.37
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	32.41
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.58
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.91
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.40
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.41
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.96

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.