Gene detail

Detailed information of OS493_016319-T1 in Lophelia pertusa

Genomic Location: scaffold_50:204085...211593
NR annotation: KAJ7385250.1, hypothetical protein OS493_016319 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DE75	Mitochondrial glycine transporter OS=Xenopus laevis OX=8355 GN=slc25a38 PE=2 SV=1
Q6DJ08	Mitochondrial glycine transporter OS=Xenopus tropicalis OX=8364 GN=slc25a38 PE=2 SV=1
P0CAT2	Mitochondrial glycine transporter B OS=Danio rerio OX=7955 GN=slc25a38b PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004751 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR030847 all species →	Family	Mitochondrial glycine transporter Hem25/SLC25A38	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46181 all species →	MITOCHONDRIAL GLYCINE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan
GO:0005743 all species →	Cellular Component	mitochondrial inner membrane	Interproscan
GO:0015187 all species →	Molecular Function	glycine transmembrane transporter activity	Interproscan
GO:1904983 all species →	Biological Process	glycine import into mitochondrion	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15118	SLC25A38; solute carrier family 25, member 38	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016319-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

105.3Max TPM

37.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.99	34.61
polyp at pH7 6	18	18	23.40	30.66
coral polyp · control treatment	16	16	33.15	50.86
coral polyp · oil and dispersant treatment	16	16	63.19	105.30
coral polyp · oil treatment	16	16	32.87	54.66
coral polyp · dispersant treatment	16	16	61.27	93.72
Polyp	10	10	22.12	30.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.61
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.24
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.98
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.92
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.42
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.71
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.68
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.62
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.21
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.03
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.55
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.82
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.03
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.36
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.51
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.69
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.11
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.32
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.48
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.86
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.15
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.51
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.74
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.43
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.01
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.13
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	105.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	90.81
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.07
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.39
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.99
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.14
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.40
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.47
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.95
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.39
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.63
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.30
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.95
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.48
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.50
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.73
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.78
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	93.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	88.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.59
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.62
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.79
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.89
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.87
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.68
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.90
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.46
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	30.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	28.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	27.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	26.88
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.36
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.48
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.12
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.61
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	15.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.