Gene detail

Detailed information of OS493_016320-T1 in Lophelia pertusa

Genomic Location: scaffold_50:215194...226107
NR annotation: KAJ7385251.1, E3 SUMO-protein ligase pias1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y6X2	E3 SUMO-protein ligase PIAS3 OS=Homo sapiens OX=9606 GN=PIAS3 PE=1 SV=2
O70260	E3 SUMO-protein ligase PIAS3 OS=Rattus norvegicus OX=10116 GN=Pias3 PE=1 SV=2
O54714	E3 SUMO-protein ligase PIAS3 OS=Mus musculus OX=10090 GN=Pias3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002299 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14324 all species →	PINIT	PINIT domain	Domain	Interproscan
PF02891 all species →	zf-MIZ	MIZ/SP-RING zinc finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038654 all species →	Homologous_superfamily	PINIT domain superfamily	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR023321 all species →	Domain	PINIT domain	Interproscan
IPR004181 all species →	Domain	Zinc finger, MIZ-type	Interproscan
IPR003034 all species →	Domain	SAP domain	Interproscan
IPR036361 all species →	Homologous_superfamily	SAP domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10782 all species →	ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000790 all species →	Cellular Component	chromatin	Interproscan
GO:0003712 all species →	Molecular Function	transcription coregulator activity	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016320-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016320-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

95.7Max TPM

24.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.52	23.43
polyp at pH7 6	18	18	17.13	22.92
coral polyp · control treatment	16	16	29.72	95.73
coral polyp · oil and dispersant treatment	16	16	35.23	60.30
coral polyp · oil treatment	16	16	22.83	36.45
coral polyp · dispersant treatment	16	16	35.32	51.64
Polyp	10	10	11.50	17.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.15
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.92
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.64
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.48
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.83
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.92
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.21
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.55
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	95.73
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.03
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.16
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.05
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.17
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.87
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.30
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.09
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.90
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.55
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.01
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.83
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.81
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.13
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.50
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.84
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.76
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.61
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.47
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.75
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.35
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.53
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.64
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.04
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.18
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.82
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.92
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.72
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.61
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.66
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.35
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.85
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.45
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.08
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	7.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.34
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	6.06

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.