Gene detail

Detailed information of OS493_016333-T1 in Lophelia pertusa

Genomic Location: scaffold_50:316643...318083
NR annotation: KAJ7385263.1, u3 small nucleolar ribonucleoprotein MPP10 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O00566	U3 small nucleolar ribonucleoprotein protein MPP10 OS=Homo sapiens OX=9606 GN=MPHOSPH10 PE=1 SV=2
Q810V0	U3 small nucleolar ribonucleoprotein protein MPP10 OS=Mus musculus OX=10090 GN=Mphosph10 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007102 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04006 all species →	Mpp10	Mpp10 protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012173 all species →	Family	U3 small nucleolar ribonucleoprotein complex, subunit Mpp10	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR17039 all species →	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN MPP10	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005732 all species →	Cellular Component	sno(s)RNA-containing ribonucleoprotein complex	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0034457 all species →	Cellular Component	Mpp10 complex	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016333-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016333-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

8.5Max TPM

3.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	2.91	5.98
polyp at pH7 6	18	18	3.58	8.48
coral polyp · control treatment	16	16	3.97	6.84
coral polyp · oil and dispersant treatment	16	15	2.43	5.09
coral polyp · oil treatment	16	16	3.30	7.28
coral polyp · dispersant treatment	16	16	2.40	6.56
Polyp	10	9	2.30	6.73

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.98
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.62
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.13
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.65
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.05
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.08
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.83
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.33
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.58
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.45
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.36
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.28
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.56
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.62
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.22
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.55
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.84
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.61
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.43
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.47
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.74
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.99
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.72
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.