Gene detail

Detailed information of OS493_016388-T1 in Lophelia pertusa

Genomic Location: scaffold_50:876583...884429
NR annotation: KAJ7385313.1, hypothetical protein OS493_016388 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P41239	Tyrosine-protein kinase CSK OS=Gallus gallus OX=9031 GN=CSK PE=2 SV=1
Q0VBZ0	Tyrosine-protein kinase CSK OS=Bos taurus OX=9913 GN=CSK PE=2 SV=1
P41240	Tyrosine-protein kinase CSK OS=Homo sapiens OX=9606 GN=CSK PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000422 (this species only)
Ubiquitin family	UBD\|Other\|SH3 · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00017 all species →	SH2	SH2 domain	Domain	Interproscan
PF14604 all species →	SH3_9	Variant SH3 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001452 all species →	Domain	SH3 domain	Interproscan
IPR000980 all species →	Domain	SH2 domain	Interproscan
IPR051184 all species →	Family	Tyrosine-phosphorylated adapter molecule	Interproscan
IPR036860 all species →	Homologous_superfamily	SH2 domain superfamily	Interproscan
IPR036028 all species →	Homologous_superfamily	SH3-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19969 all species →	SH2-SH3 ADAPTOR PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0016477 all species →	Biological Process	cell migration	Interproscan
GO:0030971 all species →	Molecular Function	receptor tyrosine kinase binding	Interproscan
GO:0035591 all species →	Molecular Function	signaling adaptor activity	Interproscan
GO:0036493 all species →	Biological Process	positive regulation of translation in response to endoplasmic reticulum stress	Interproscan
GO:1902237 all species →	Biological Process	positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway	Interproscan
GO:1903898 all species →	Biological Process	negative regulation of PERK-mediated unfolded protein response	Interproscan
GO:1903912 all species →	Biological Process	negative regulation of endoplasmic reticulum stress-induced eIF2 alpha phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016388-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016388-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

75.2Max TPM

30.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	23.86	34.19
polyp at pH7 6	18	18	23.57	39.29
coral polyp · control treatment	16	16	41.13	66.45
coral polyp · oil and dispersant treatment	16	16	42.34	75.18
coral polyp · oil treatment	16	16	31.51	51.51
coral polyp · dispersant treatment	16	16	33.44	45.41
Polyp	10	10	11.49	18.31

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.61
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.91
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.20
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.29
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.53
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.12
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.37
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.64
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.88
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.92
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.10
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.63
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.11
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.93
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.47
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.59
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.45
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.09
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.94
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.68
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.39
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.04
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.74
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.95
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.47
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.87
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.60
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.40
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.24
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.90
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.27
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.70
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.15
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.51
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.84
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.80
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.21
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.91
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.77
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.12
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.31
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.14
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.41
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.10
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.72
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.40
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.25
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.69
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.25
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.17
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	17.83
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	9.08
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.89
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.