Detailed information of OS493_016404-T1 in Lophelia pertusa

Genomic Location: scaffold_50:1002117...1013398
NR annotation: KAJ7385328.1, hypothetical protein OS493_016404 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6P9R4Rho guanine nucleotide exchange factor 18 OS=Mus musculus OX=10090 GN=Arhgef18 PE=1 SV=3
Q6ZSZ5Rho guanine nucleotide exchange factor 18 OS=Homo sapiens OX=9606 GN=ARHGEF18 PE=1 SV=4
P97433Rho guanine nucleotide exchange factor 28 OS=Mus musculus OX=10090 GN=Arhgef28 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001928 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00621
all species →		RhoGEFRhoGEF domainDomainInterproscan
PF17838
all species →		PH_16PH domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR000219
all species →		DomainDbl homology (DH) domainInterproscan
IPR011993
all species →		Homologous_superfamilyPH-like domain superfamilyInterproscan
IPR001849
all species →		DomainPleckstrin homology domainInterproscan
IPR035899
all species →		Homologous_superfamilyDbl homology (DH) domain superfamilyInterproscan
IPR051632
all species →		FamilyRho guanine nucleotide exchange factorInterproscan
IPR041020
all species →		DomainARHGEF1-like, PH domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR13944
all species →		AGAP007712-PAInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005085
all species →		Molecular Functionguanyl-nucleotide exchange factor activityInterproscan
GO:0035023
all species →		Biological Processregulation of Rho protein signal transductionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_016404-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_016404-T1 global co-expression network
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