Gene detail

Detailed information of OS493_016445-T1 in Lophelia pertusa

Genomic Location: scaffold_50:1543326...1548661
NR annotation: KAJ7385365.1, hypothetical protein OS493_016445 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P80585	Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2
O75347	Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3
Q6PEC1	Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008249 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02970 all species →	TBCA	Tubulin binding cofactor A	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036126 all species →	Homologous_superfamily	Tubulin binding cofactor A superfamily	Interproscan
IPR004226 all species →	Family	Tubulin binding cofactor A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21500 all species →	TUBULIN-SPECIFIC CHAPERONE A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007021 all species →	Biological Process	tubulin complex assembly	Interproscan
GO:0007023 all species →	Biological Process	post-chaperonin tubulin folding pathway	Interproscan
GO:0048487 all species →	Molecular Function	beta-tubulin binding	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan
GO:0015631 all species →	Molecular Function	tubulin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17292	TBCA; tubulin-specific chaperone A	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016445-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

171.7Max TPM

52.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	51.03	82.03
polyp at pH7 6	18	18	56.43	116.31
coral polyp · control treatment	16	16	58.74	165.58
coral polyp · oil and dispersant treatment	16	16	47.59	135.34
coral polyp · oil treatment	16	16	52.00	77.22
coral polyp · dispersant treatment	16	16	41.04	81.34
Polyp	10	10	67.15	171.75

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	82.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.32
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.39
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.77
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.16
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.05
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.88
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.05
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.60
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	116.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	97.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.02
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	62.39
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.27
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.13
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.37
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.84
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	165.58
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	73.63
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.51
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.18
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.82
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.51
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.14
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.43
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.14
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.06
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.39
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.02
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.18
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.22
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.90
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.99
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.54
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.45
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.45
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.87
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.61
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.90
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.34
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.59
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.08
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.19
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.69
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.53
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.40
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.04
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.92
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.10
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.61
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	171.75
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	87.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	76.97
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	76.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	49.36
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	43.78
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	42.97
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	41.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	41.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	38.80

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.