Gene detail

Detailed information of OS493_016480-T1 in Lophelia pertusa

Genomic Location: scaffold_50:1896793...1905483
NR annotation: KAJ7385398.1, hypothetical protein OS493_016480 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009821 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05439 all species →	JTB	Jumping translocation breakpoint protein (JTB)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008657 all species →	Family	Jumping translocation breakpoint	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13041 all species →	JTB PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005813 all species →	Cellular Component	centrosome	Interproscan
GO:0005819 all species →	Cellular Component	spindle	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0030496 all species →	Cellular Component	midbody	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016480-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016480-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

131.4Max TPM

32.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	11.45	26.83
polyp at pH7 6	18	16	13.41	22.76
coral polyp · control treatment	16	16	31.48	71.95
coral polyp · oil and dispersant treatment	16	16	58.37	87.86
coral polyp · oil treatment	16	16	25.92	38.96
coral polyp · dispersant treatment	16	16	73.22	131.45
Polyp	10	9	13.62	18.94

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.87
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.76
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.78
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.02
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.41
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.28
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.09
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.57
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.93
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.92
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.33
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	87.86
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.89
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.01
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.19
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.41
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.79
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.72
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.96
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.70
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.81
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.57
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.08
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.59
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.38
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.46
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.76
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	113.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.92
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	89.12
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	84.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	73.68
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.08
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	50.31
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.55
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.82
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.55
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.20
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.