Gene detail

Detailed information of OS493_016504-T1 in Lophelia pertusa

Genomic Location: scaffold_50:2107690...2112747
NR annotation: KAJ7385420.1, Peroxisomal membrane protein PMP30B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z211	Peroxisomal membrane protein 11A OS=Mus musculus OX=10090 GN=Pex11a PE=1 SV=1
Q00316	Peroxisomal membrane protein PMP30A OS=Candida boidinii OX=5477 GN=PEX11A PE=1 SV=1
Q00317	Peroxisomal membrane protein PMP30B OS=Candida boidinii OX=5477 GN=PEX11B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008614 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05648 all species →	PEX11	Peroxisomal biogenesis factor 11 (PEX11)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008733 all species →	Family	Peroxisomal biogenesis factor 11	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12652 all species →	PEROXISOMAL BIOGENESIS FACTOR 11	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005778 all species →	Cellular Component	peroxisomal membrane	Interproscan
GO:0016559 all species →	Biological Process	peroxisome fission	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13352	PEX11B; peroxin-11B	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016504-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

121.6Max TPM

19.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.80	10.24
polyp at pH7 6	18	17	6.86	12.07
coral polyp · control treatment	16	16	17.75	36.85
coral polyp · oil and dispersant treatment	16	16	43.51	102.02
coral polyp · oil treatment	16	16	16.40	32.21
coral polyp · dispersant treatment	16	16	34.77	121.57
Polyp	10	9	7.89	19.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.24
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.28
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.21
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.61
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.08
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.84
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.22
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.54
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.28
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.85
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.92
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.46
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.93
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.88
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.81
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.89
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.42
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.29
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.30
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.02
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.00
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.31
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.64
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.31
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.42
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.21
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.98
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.69
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.88
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.63
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.38
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.85
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.57
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.60
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.86
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.02
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	19.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	10.84
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.07
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.45
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.38
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.