Gene detail

Detailed information of OS493_016508-T1 in Lophelia pertusa

Genomic Location: scaffold_50:2174732...2178232
NR annotation: KAJ7385424.1, DTW domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8NBA8	tRNA-uridine aminocarboxypropyltransferase 2 OS=Homo sapiens OX=9606 GN=DTWD2 PE=1 SV=1
Q4R7M4	tRNA-uridine aminocarboxypropyltransferase 2 OS=Macaca fascicularis OX=9541 GN=DTWD2 PE=2 SV=1
Q9D0U1	tRNA-uridine aminocarboxypropyltransferase 2 OS=Mus musculus OX=10090 GN=Dtwd2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008110 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03942 all species →	DTW	DTW domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039262 all species →	Family	DTW domain-containing protein DTWD2/TAPT	Interproscan
IPR005636 all species →	Domain	DTW	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21392 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

No Gene Ontology signature was recorded for OS493_016508-T1 in Lophelia pertusa.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05812	DTWD2, tapT; tRNA-uridine aminocarboxypropyltransferase	EC:2.5.1.25	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016508-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

11.7Max TPM

4.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.28	6.07
polyp at pH7 6	18	18	3.73	6.07
coral polyp · control treatment	16	16	6.57	11.66
coral polyp · oil and dispersant treatment	16	16	4.59	9.25
coral polyp · oil treatment	16	16	5.99	9.50
coral polyp · dispersant treatment	16	16	3.10	5.59
Polyp	10	8	3.46	7.46

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.39
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.84
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.24
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.55
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.24
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.27
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.66
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.97
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.94
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.65
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.25
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.98
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.50
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.65
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.64
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.76
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.39
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.86
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.83
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.60
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.52
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.47
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.58
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.