Detailed information of OS493_016570-T1 in Lophelia pertusa

Genomic Location: scaffold_51:371904...380561
NR annotation: KAJ7379336.1, Lysine-specific demethylase 5A [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P29375Lysine-specific demethylase 5A OS=Homo sapiens OX=9606 GN=KDM5A PE=1 SV=3
Q3UXZ9Lysine-specific demethylase 5A OS=Mus musculus OX=10090 GN=Kdm5a PE=1 SV=2
P41229Lysine-specific demethylase 5C OS=Homo sapiens OX=9606 GN=KDM5C PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004250 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF02928
all species →		zf-C5HC2C5HC2 zinc fingerDomainInterproscan
PF21323
all species →		KDM5_C-helLysine-specific demethylase 5, C-terminal helical domainDomainInterproscan
PF08429
all species →		PLU-1PLU-1-like proteinFamilyInterproscan
PF02373
all species →		JmjCJmjC domain, hydroxylaseDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003347
all species →		DomainJmjC domainInterproscan
IPR004198
all species →		DomainZinc finger, C5HC2-typeInterproscan
IPR048615
all species →		DomainLysine-specific demethylase 5, C-terminal helical domainInterproscan
IPR013637
all species →		DomainLysine-specific demethylase-like domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR10694
all species →		LYSINE-SPECIFIC DEMETHYLASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000785
all species →		Cellular ComponentchromatinInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006338
all species →		Biological Processchromatin remodelingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0010468
all species →		Biological Processregulation of gene expressionInterproscan
GO:0032452
all species →		Molecular Functionhistone demethylase activityInterproscan
GO:0034647
all species →		Molecular Functionhistone H3K4me/H3K4me2/H3K4me3 demethylase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_016570-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_016570-T1 global co-expression network
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