Gene detail

Detailed information of OS493_016578-T1 in Lophelia pertusa

Genomic Location: scaffold_51:464094...472236
NR annotation: KAJ7379344.1, Cyclin-D-binding Myb-like transcription factor 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Y222	Cyclin-D-binding Myb-like transcription factor 1 OS=Homo sapiens OX=9606 GN=DMTF1 PE=1 SV=1
Q66HG1	Cyclin-D-binding Myb-like transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Dmtf1 PE=2 SV=2
Q8CE22	Cyclin-D-binding Myb-like transcription factor 1 OS=Mus musculus OX=10090 GN=Dmtf1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001368 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13921 all species →	Myb_DNA-bind_6	Myb-like DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017930 all species →	Domain	Myb domain	Interproscan
IPR001005 all species →	Domain	SANT/Myb domain	Interproscan
IPR051651 all species →	Family	DMTF1 DNA-binding transcriptional regulators	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46380 all species →	CYCLIN-D-BINDING MYB-LIKE TRANSCRIPTION FACTOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21625	DMTF1, DMP1; cyclin-D-binding Myb-like transcription factor 1	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016578-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

21.9Max TPM

7.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.44	8.61
polyp at pH7 6	18	18	4.81	8.16
coral polyp · control treatment	16	16	9.09	19.68
coral polyp · oil and dispersant treatment	16	16	13.34	21.88
coral polyp · oil treatment	16	16	8.35	13.43
coral polyp · dispersant treatment	16	16	6.41	14.91
Polyp	10	10	3.90	5.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.60
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.31
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.75
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.56
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.44
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.36
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.61
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.22
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.83
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.88
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.65
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.70
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.88
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.27
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.33
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.17
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.46
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.76
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.64
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.60
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.40
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.01
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.00
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.18
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.30
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.14
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.91
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.85
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.22
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.91
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.81
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.36
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.95
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.91
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.07
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.27
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.82
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.80
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.63
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.89
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.69

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.