Gene detail

Detailed information of OS493_016587-T1 in Lophelia pertusa

Genomic Location: scaffold_51:733128...734933
NR annotation: KAJ7379353.1, hypothetical protein OS493_016587 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R080	G2 and S phase-expressed protein 1 OS=Mus musculus OX=10090 GN=Gtse1 PE=1 SV=2
Q9NYZ3	G2 and S phase-expressed protein 1 OS=Homo sapiens OX=9606 GN=GTSE1 PE=1 SV=4

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009200 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15259 all species →	GTSE1_N	G-2 and S-phase expressed 1	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026657 all species →	Family	Proline/serine-rich coiled-coil protein 1/G2 and S phase-expressed protein 1	Interproscan
IPR032768 all species →	Domain	G2 and S phase-expressed protein 1, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21584 all species →	DIFFERENTIAL DISPLAY AND ACTIVATED BY P53 DDA3 /G2 S PHASE EXPRESSED 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0015630 all species →	Cellular Component	microtubule cytoskeleton	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016587-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016587-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

69TPM > 0

7Conditions

31.9Max TPM

1.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	4	0.28	2.82
polyp at pH7 6	18	6	0.36	2.00
coral polyp · control treatment	16	13	2.75	23.89
coral polyp · oil and dispersant treatment	16	13	2.99	31.94
coral polyp · oil treatment	16	15	1.82	4.88
coral polyp · dispersant treatment	16	14	2.06	7.00
Polyp	10	4	0.39	1.32

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.82
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.83
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.66
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.00
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.98
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.67
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.60
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.85
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.79
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.95
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.83
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.05
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.37
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.82
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.81
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.26
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.32
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.59
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.