Gene detail

Detailed information of OS493_016588-T1 in Lophelia pertusa

Genomic Location: scaffold_51:738592...745104
NR annotation: KAJ7379354.1, hypothetical protein OS493_016588 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8IZF6	Adhesion G-protein coupled receptor G4 OS=Homo sapiens OX=9606 GN=ADGRG4 PE=1 SV=2
C6KFA3	Adhesion G-protein coupled receptor G6 OS=Danio rerio OX=7955 GN=adgrg6 PE=1 SV=1
Q80T32	Adhesion G-protein coupled receptor D1 OS=Mus musculus OX=10090 GN=Adgrd1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000570 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00002 all species →	7tm_2	7 transmembrane receptor (Secretin family)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000832 all species →	Family	GPCR, family 2, secretin-like	Interproscan
IPR017981 all species →	Domain	GPCR, family 2-like, 7TM	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45692 all species →	G_PROTEIN_RECEP_F2_4 DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004930 all species →	Molecular Function	G protein-coupled receptor activity	Interproscan
GO:0007186 all species →	Biological Process	G protein-coupled receptor signaling pathway	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0004888 all species →	Molecular Function	transmembrane signaling receptor activity	Interproscan
GO:0007166 all species →	Biological Process	cell surface receptor signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016588-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016588-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

131.8Max TPM

29.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.91	25.96
polyp at pH7 6	18	18	13.48	17.33
coral polyp · control treatment	16	16	35.11	82.67
coral polyp · oil and dispersant treatment	16	16	46.05	104.22
coral polyp · oil treatment	16	16	30.90	57.72
coral polyp · dispersant treatment	16	16	53.66	131.85
Polyp	10	10	6.80	10.30

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.96
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.67
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.28
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.27
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.49
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.94
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.04
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.20
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.50
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.89
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.25
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.33
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.02
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.84
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.59
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.51
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.86
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.46
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.13
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.51
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.35
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.72
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.31
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.08
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.22
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.24
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.36
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.53
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.69
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.76
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.17
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.72
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.05
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.87
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.67
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.56
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.50
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.32
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.40
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	131.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	128.83
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.39
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.15
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.44
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.72
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.14
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.14
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.25
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.42
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.30
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.12
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.11
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.84
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.83
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.17
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.28

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.