Gene detail

Detailed information of OS493_016615-T1 in Lophelia pertusa

Genomic Location: scaffold_51:1106942...1108233
NR annotation: KAJ7379378.1, hypothetical protein OS493_016615 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P08110	Endoplasmin OS=Gallus gallus OX=9031 GN=HSP90B1 PE=1 SV=1
O18750	Endoplasmin OS=Oryctolagus cuniculus OX=9986 GN=HSP90B1 PE=2 SV=2
P08113	Endoplasmin OS=Mus musculus OX=10090 GN=Hsp90b1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001833 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_016615-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR036890 all species →	Homologous_superfamily	Histidine kinase/HSP90-like ATPase superfamily	Interproscan
IPR020575 all species →	Domain	Heat shock protein Hsp90, N-terminal	Interproscan
IPR001404 all species →	Family	Heat shock protein Hsp90 family	Interproscan
IPR019805 all species →	Conserved_site	Heat shock protein Hsp90, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11528 all species →	HEAT SHOCK PROTEIN 90 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0006457 all species →	Biological Process	protein folding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0051082 all species →	Molecular Function	unfolded protein binding	Interproscan
GO:0140662 all species →	Molecular Function	ATP-dependent protein folding chaperone	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016615-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016615-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

89.2Max TPM

37.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.74	38.89
polyp at pH7 6	18	18	35.35	55.10
coral polyp · control treatment	16	16	45.01	65.92
coral polyp · oil and dispersant treatment	16	16	45.46	89.23
coral polyp · oil treatment	16	16	36.19	65.02
coral polyp · dispersant treatment	16	16	39.96	62.99
Polyp	10	10	19.46	40.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.88
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.43
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.13
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.17
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.61
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.16
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.26
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.93
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.01
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.68
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.38
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.52
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.29
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.74
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.52
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.07
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.98
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.92
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	62.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.93
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.10
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.25
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.65
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.36
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.72
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.45
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.76
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.63
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.54
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.77
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.01
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.81
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	65.02
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.08
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.19
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.25
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.22
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.12
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.15
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.82
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.86
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.99
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.46
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.98
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.19
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.62
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.24
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.80
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.46
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	40.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	29.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.63
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.17
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.75
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	14.35
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.18
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	9.27

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.