Gene detail

Detailed information of OS493_016641-T1 in Lophelia pertusa

Genomic Location: scaffold_51:1438921...1443635
NR annotation: KAJ7379404.1, Katanin p80 WD40 repeat-containing subunit B1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009596 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13925 all species →	Katanin_con80	con80 domain of Katanin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028021 all species →	Domain	Katanin p80 subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19845 all species →	KATANIN P80 SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0007019 all species →	Biological Process	microtubule depolymerization	Interproscan
GO:0008352 all species →	Cellular Component	katanin complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016641-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016641-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

55.0Max TPM

7.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	4.20	6.48
polyp at pH7 6	18	14	2.76	13.97
coral polyp · control treatment	16	16	14.14	55.04
coral polyp · oil and dispersant treatment	16	16	6.57	27.39
coral polyp · oil treatment	16	16	12.27	49.49
coral polyp · dispersant treatment	16	16	4.45	15.08
Polyp	10	9	6.40	18.90

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.48
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.01
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.93
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.97
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.06
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.21
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.14
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.17
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.62
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.54
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.28
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.39
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.94
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.82
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.07
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.52
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.96
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.02
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.90
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.09
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.50
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.47
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.83
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.59
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.61
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.43
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.70
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.