Gene detail

Detailed information of OS493_016687-T1 in Lophelia pertusa

Genomic Location: scaffold_51:2285113...2294885
NR annotation: KAJ7379446.1, hypothetical protein OS493_016687 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08BT9	N-fatty-acyl-amino acid synthase/hydrolase PM20D1 OS=Xenopus tropicalis OX=8364 GN=pm20d1 PE=2 SV=1
Q8C165	N-fatty-acyl-amino acid synthase/hydrolase PM20D1 OS=Mus musculus OX=10090 GN=Pm20d1 PE=1 SV=1
Q2T9M7	N-fatty-acyl-amino acid synthase/hydrolase PM20D1 OS=Bos taurus OX=9913 GN=PM20D1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009108 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01546 all species →	Peptidase_M20	Peptidase family M20/M25/M40	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002933 all species →	Family	Peptidase M20	Interproscan
IPR047177 all species →	Family	Peptidase M20A	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45962 all species →	N-FATTY-ACYL-AMINO ACID SYNTHASE/HYDROLASE PM20D1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016787 all species →	Molecular Function	hydrolase activity	Interproscan
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0006807 all species →	Biological Process	obsolete nitrogen compound metabolic process	Interproscan
GO:0016811 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	Interproscan
GO:0043604 all species →	Biological Process	amide biosynthetic process	Interproscan
GO:0043605 all species →	Biological Process	amide catabolic process	Interproscan
GO:0044255 all species →	Biological Process	obsolete cellular lipid metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016687-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016687-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

13.0Max TPM

5.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.80	9.12
polyp at pH7 6	18	18	6.99	11.80
coral polyp · control treatment	16	16	5.69	10.62
coral polyp · oil and dispersant treatment	16	15	3.88	8.54
coral polyp · oil treatment	16	16	5.90	13.02
coral polyp · dispersant treatment	16	16	4.02	10.09
Polyp	10	8	2.51	6.33

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.21
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.82
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.26
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.12
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.91
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.37
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.17
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.41
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.62
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.57
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.41
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.25
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.61
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.17
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.62
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.56
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.75
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.06
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.79
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.47
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.37
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.37
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.19
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.01
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.30
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.19
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.72
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.55
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.48
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.44
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.57
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.12
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.93
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.09
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.74
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.78
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.68
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.85
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.35
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	6.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.12
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.70
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.