Gene detail

Detailed information of OS493_016715-T1 in Lophelia pertusa

Genomic Location: scaffold_52:149302...150828
NR annotation: KAJ7372796.1, hypothetical protein OS493_016715 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q05AQ8	Zinc finger protein 503 OS=Xenopus tropicalis OX=8364 GN=znf503 PE=2 SV=1
Q7ZWN6	Zinc finger protein 703-A OS=Xenopus laevis OX=8355 GN=znf703-a PE=2 SV=2
Q6UFS5	Zinc finger protein 503 OS=Danio rerio OX=7955 GN=znf503 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009152 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_016715-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR051520 all species →	Family	Elbow/Noc Zinc Finger	Interproscan
IPR013087 all species →	Domain	Zinc finger C2H2-type	Interproscan
IPR036236 all species →	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12522 all species →	ZINC-FINGER PROTEIN NOLZ1-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016715-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016715-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

111.6Max TPM

47.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	49.68	69.55
polyp at pH7 6	18	18	56.04	71.16
coral polyp · control treatment	16	16	51.84	71.38
coral polyp · oil and dispersant treatment	16	16	34.31	78.13
coral polyp · oil treatment	16	16	49.19	82.61
coral polyp · dispersant treatment	16	16	33.54	67.94
Polyp	10	10	57.44	111.57

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.43
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	66.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.65
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	56.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	53.01
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.51
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.31
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.18
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.15
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.36
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.36
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.16
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.01
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.50
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.99
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.89
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	55.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.63
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.44
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.04
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.72
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	71.38
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.54
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.92
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.79
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.74
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.03
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.30
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.01
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.31
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.62
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.13
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.71
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.42
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.19
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.01
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.72
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.67
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.59
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	82.61
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	69.10
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.53
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	68.48
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.42
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.14
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.28
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.36
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.26
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.23
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.71
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.90
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.74
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.08
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.14
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.79
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.68
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.73
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.75
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.46
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.81
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	111.57
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	72.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	69.37
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	68.50
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	64.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	56.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	48.98
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	40.11
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.