Detailed information of OS493_016790-T1 in Lophelia pertusa

Genomic Location: scaffold_52:1754152...1777013
NR annotation: KAJ7372864.1, La- protein 4 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BWW4La-related protein 4 OS=Mus musculus OX=10090 GN=Larp4 PE=1 SV=2
Q71RC2La-related protein 4 OS=Homo sapiens OX=9606 GN=LARP4 PE=1 SV=3
Q9I7T7La-related protein Larp4B OS=Drosophila melanogaster OX=7227 GN=Larp4B PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006587 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05383
all species →		LaLa domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR045180
all species →		FamilyLa domain containing proteinInterproscan
IPR036388
all species →		Homologous_superfamilyWinged helix-like DNA-binding domain superfamilyInterproscan
IPR036390
all species →		Homologous_superfamilyWinged helix DNA-binding domain superfamilyInterproscan
IPR006630
all species →		DomainLa-type HTH domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR22792
all species →		LUPUS LA PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003723
all species →		Molecular FunctionRNA bindingInterproscan
GO:0003730
all species →		Molecular FunctionmRNA 3'-UTR bindingInterproscan
GO:0005829
all species →		Cellular ComponentcytosolInterproscan
GO:0010494
all species →		Cellular Componentcytoplasmic stress granuleInterproscan
GO:0045727
all species →		Biological Processpositive regulation of translationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_016790-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_016790-T1 global co-expression network
TOP