Gene detail

Detailed information of OS493_016958-T1 in Lophelia pertusa

Genomic Location: scaffold_53:1485438...1502538
NR annotation: KAJ7360327.1, Large proline-rich protein bag6 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

OS493_016958-T1

ATGATGCAGATATCTGTGAAGACATTAGATTCGCAGACAAAAGTCTTCACTGTCTCCGAAGAGAGTACCGTGAAAGAATTCAAGGAACAGATTGCCACCGATGTCAATATACCTCCTGATAAGCAAAGACTCATTTTTAAAGGCAAGGTCTTACAAGATGACAAGAAACTCTCAGAATATGGAGCTGATGGTTGTGTGATTCACCTTGTTGAAAGAAAACCTCCAGTTCCTGGTTCTCAAGATGGGGCCAATGGATCTTCCAGCACTTCCACCAGTTCATCTTCACCAGGAGGTCTGCCTCTTGGACTGGGTCCTAACATAGTCATGGGAGCTTTTTCCATGCCAGTTGATGTAGTTGGAGCTACTCAGCAAATAGTTCAGAGTCTTGTCAATCAGCTAGGAGTGGATTCAGCCCAAGCTAATATCAGTACCACATCATCTGACGATGGTTCTTCTGTCAATGTTCATATTAACCTTCAAGCAACAACTCAGCCTGGAAATGATGTGTCACAGCGCATTAACAGGGCAAGGCATTTTATAAGGGCTGCATCTTCCTCTTTGAACAGGACCGAGGGTGAGGGTGTTCTTCCCATGGATACATCAGACACTCCGAGTACTGAAAACACCAATCAAACTCCAAGACCCTCCACAGAAGCTGGTAGCCAAACTTCAGCCCTCTCCAGCCCAGCAGCCTTGGCACAGATATTAAGGGAAACAAGGAGCTCAATGACATCCATGCAAACAGCACTGGACAGATATGCTTCTCTTTTGGATACTAATACACCCGAGAACTTAGGTCCTTCAGAAGACACTTTACCTGATCAGGTAGCTGAAGCATTCCACAACCTTAGCCATGCTTACCATGCACTGTCAGACATGACGTTCAATTTCCGTGGTCCTGAACCACGACGTCCAAGTGTTCTGACATCTCTGTCTCCTCACATTCCATCAGTGCCCATGCTGTCCAGTTTTGTGGGTGCACCTCAAATGATGTCAAGCCAAGCAGCTCAGCAACCTCCTGCCAGTTCCTCAGCACCACAGGCAACCCCGCCAACACCAGGTGCAACACCAGCTGCAGCGGGACCAGGTGCAACACCAGCTGCAGCGGGACCAGGTGCTCCACAGTCTCTTCCAACAGGCACTAACCAGAACTTGAGAATTCATGTCAATCCTCAAGGTGGAATCTCATTTACTACCATAATATCCAATGTATCGCGTCCAGGCACTGCCGCACCTGTCAACACTCAGTCAACACCATCTACAACATCCACAAGTGGGACAAGGATGAGTGCTAGCGCAGATAATGGTGCTGCTAGAGAGACTTTTTCAAGCTCATTTGGCGAGCAGCGTTCCTCAGTGGGCACTAACACAAATGGCAGCAGTACTAGTACGTCGACCCAGACTTCACAGCCAGCTAGTGTACGGACTCGTATTATAGTAGATGATTTTATTGCATTGATTTCAAATGTTCCAGCTTCCATGGCTGCCGCAGCCGCAGCCGCTGCAGCCCAGGGTCAGGTACCACCAGGTATGCCTGGGGCTCAGAATCAGCCCCGCACACAGGGACAAGGAGCAGCAACAACAACTACCACCACAGGTCAGCCGCAGCCACAGGCCCAGCCTGTACCGACACCTGGAGCACAGAGTGCAGCACCAGCAGGGCAGGATCAAGCCAGACCTCAGGGACTACCTCAGGGGTTCCCTCAGGGATTACCAGCTGGACTGTCGATGAATCTTCTTTCTGGTATGATGCCAGGGACAAATTCAAATCACCCCGACCCATCTTTGCCTTGCCAGTCATTTCATTTTGGACCTCAGGCACAGCGATCTCAGCCACAGCGTTCTCAGCCACAGCAAACCAACCAGCAATCTACAAGTACAACCACAGTGCCTGGTACAACTCCTGTAACTAGTGCTCCTCAGAGTCAAACTCCAACTCAGCAGGCAAGTGAACAGACTGCCAATCCTGCTAACCCACCACCCGAGCGACATAGGCCACCACCAGAACGGAGGACCAGAGGCCGTGATCGTACAATATCTCCAGCTGATTTGCAAGGGATATTGGGAATGATTGCGCATGATCAGCGCACTGGTACAAGGGGATTTCCACCATTTTTCCCCAGAGGCTCAAGTCGAGGAGCAACTAGACAGTCAAGTGGCCCAATGAGTGCAAGAGAAACAAGAAGATCAATGATGGATTTCTTGGACAATATCATGTCAGACATTCATGGCCATAGTGAAGGTCAGACACAGACAATTAACTCTCTGATCCAAACCATGCGAACAAGTGGACTGGATATACAAGATGAAGAAGGATTGGTAGCAGCCCTGTATCAGCGTCTGAGTGCTGTGATGACAATCGAGGATGTCATGGGCGTGGTCGTGGGTTCAGAGAGACCATTTGAACGAATGCAGCCAGCTTTGATGTTGTATGTAAAGGAGGACCTCTTACATGGAAAAGAAGCCACACACGAGAATATTGCTAAAGCAGTGGAGGAGTTGAGCAAAGAGATTGTTGATGGCATCGCTGATTCCTTAAGAAGTGTTCCCACTAAAGATGAAATTGATATCGTCATATCAGCGCAGAGTTTTCTGGAGTTTTACATCAGAAGTGCAGTGGACTTGGTTTTAAATTCGGATGGTGACGTTTGTTGTTCCGTTTCTGCTGTAAACAGAAGAAAACCGCGATTTGCGGAGTACTTTCAAGGTCACATGAAGGACATAGCTGCAGAATTCTTCACATTGCTGGTGTTCTGCTACAGGGATGGTTTAGACGGAGTGGAACAAGTTGTCAGGAATAGAACGCCACAGTCAAGCTTAACACAAGACATGGATGAACAATCGCGAGAGATGTTTGTTCAGCTCTTGCTCAGGAACATCCGACAGATGTACTACAGCAGGGCTTACTGTGAACCACGACTGCAACGCTTCATGAAAAAAGCCCCACCGCCGCCGCCTCCTGCTGCACAACCACAAGCTCCTCCTGCGCAACCCGTGCCTGAGGAAAGCGTACAGGTGGATGGGGCTGTGGACGAAGAAATGGACAGTCATGGCTCTGATGACTCGGAGACTTTTACTACTCCCCCCGGATCTATTATAACAGGCACTGATTCAGACAGGGTGCAGACGGAATGCCCGGAGGGGGTGGAGGCTATGGATGATGACCGCGGGGATGAGGAGTGGAAGACAATCATGCCCGATGAGTGGATCCCTGTCATCACTACAGATATTGTGCGGCAGAGAAGAATGTCTCCCCAGGCACCTTTCAGTGATGCTTACACGAACGGACTACCACCCAAGAGGCGTAAGATCGTAGACCAGCGTGGCATTACTCCAAGTGAAGACAGCATTGGTGACGCACTGAAGCATGCCGCTGCCGCTACAGGAGCCACGCCTCTCACGAGCTTGGAAGATCTTTCGAAAGCCGCTCAGGGAAATCGCAAACTGCATGGAGCATACCGCAGAGAGGTTCAAAAAGAAGTCAAGACAAGACTCGAAAAAGACTCCGACTACCGACCTGATAGATTTCCCCAGACAAGAGACTATTTTGACAAGGACACTCAGAGGAACTAG

Transcript

OS493_016958-T1

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YHD3	Large proline-rich protein bag6-A OS=Xenopus laevis OX=8355 GN=Bag6-a PE=2 SV=1
A4IH17	Large proline-rich protein bag6 OS=Xenopus tropicalis OX=8364 GN=Bag6 PE=2 SV=1
A3KPW9	Large proline-rich protein BAG6 OS=Danio rerio OX=7955 GN=Bag6 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004983 (this species only)
Ubiquitin family	ULD\|UBL\|NEDD8 · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_Other · all ubiquitin genes in this species
Ubiquitin family	ULD\|UFD/UBQ\|UBQ_PIM · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12057 all species →	BAG6	BCL2-associated athanogene 6	Domain	Interproscan
PF00240 all species →	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR021925 all species →	Domain	Large proline-rich protein BAG6	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000626 all species →	Domain	Ubiquitin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15204 all species →	LARGE PROLINE-RICH PROTEIN BAG6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0030433 all species →	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0031593 all species →	Molecular Function	polyubiquitin modification-dependent protein binding	Interproscan
GO:0051787 all species →	Molecular Function	misfolded protein binding	Interproscan
GO:0071818 all species →	Cellular Component	BAT3 complex	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23390	BAG6; large proline-rich protein BAG6	-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern

Expression trend for OS493_016958-T1 global co-expression network