Gene detail

Detailed information of OS493_016971-T1 in Lophelia pertusa

Genomic Location: scaffold_53:1660673...1669422
NR annotation: KAJ7360339.1, Uridine-cytidine kinase 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BZX2	Uridine-cytidine kinase 2 OS=Homo sapiens OX=9606 GN=UCK2 PE=1 SV=1
Q99PM9	Uridine-cytidine kinase 2 OS=Mus musculus OX=10090 GN=Uck2 PE=1 SV=1
Q9QYG8	Uridine-cytidine kinase 2 OS=Rattus norvegicus OX=10116 GN=Uck2 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000924 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00485 all species →	PRK	Phosphoribulokinase / Uridine kinase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000764 all species →	Family	Uridine kinase-like	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR006083 all species →	Domain	Phosphoribulokinase/uridine kinase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10285 all species →	URIDINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0050262 all species →	Molecular Function	ribosylnicotinamide kinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00876	udk, UCK; uridine kinase	EC:2.7.1.48	Drug metabolism - other enzymes	ko00983	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016971-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

65.9Max TPM

24.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	16.25	26.77
polyp at pH7 6	18	18	15.37	23.65
coral polyp · control treatment	16	16	37.34	65.90
coral polyp · oil and dispersant treatment	16	16	26.98	49.45
coral polyp · oil treatment	16	16	27.27	38.60
coral polyp · dispersant treatment	16	16	26.41	41.17
Polyp	10	10	28.00	61.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.77
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.70
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.69
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.87
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.84
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.16
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.09
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.78
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.46
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.74
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.09
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.81
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.73
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.36
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.20
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.55
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	65.90
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.33
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.22
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.80
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.20
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.23
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.86
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.45
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.31
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.89
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.81
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.24
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.95
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.32
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.60
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.11
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.49
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.26
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.99
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.77
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.44
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.62
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.17
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.79
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.16
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.31
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.61
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.04
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.82
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.39
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.77
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.51
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	61.07
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	44.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	29.60
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	25.68
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	21.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.96
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	12.70

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.