Gene detail

Detailed information of OS493_016979-T1 in Lophelia pertusa

Genomic Location: scaffold_53:1739599...1747100
NR annotation: KAJ7360347.1, Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P31230	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Mus musculus OX=10090 GN=Aimp1 PE=1 SV=2
Q12904	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Homo sapiens OX=9606 GN=AIMP1 PE=1 SV=2
O54873	Aminoacyl tRNA synthase complex-interacting multifunctional protein 1 OS=Cricetulus griseus OX=10029 GN=AIMP1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001647 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01588 all species →	tRNA_bind	Putative tRNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051270 all species →	Family	Tyrosine-tRNA ligase and regulatory protein	Interproscan
IPR002547 all species →	Domain	tRNA-binding domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11586 all species →	TRNA-AMINOACYLATION COFACTOR ARC1 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000049 all species →	Molecular Function	tRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15437	AIMP1, ARC1; aminoacyl tRNA synthase complex-interacting multifunctional protein 1	-	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016979-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

266.7Max TPM

125.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	155.45	186.96
polyp at pH7 6	18	18	139.41	150.63
coral polyp · control treatment	16	16	109.63	174.34
coral polyp · oil and dispersant treatment	16	16	88.78	167.27
coral polyp · oil treatment	16	16	121.40	179.97
coral polyp · dispersant treatment	16	16	86.77	216.12
Polyp	10	10	197.07	266.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	186.96
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.77
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	175.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	173.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	167.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	159.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.84
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.07
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	153.47
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	146.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	145.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	143.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	141.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.12
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	146.67
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.30
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	142.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.51
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	140.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	138.43
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.82
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	137.72
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	136.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	135.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.58
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	132.98
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	174.34
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	152.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	123.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.54
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.65
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.96
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	97.80
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.41
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	87.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	84.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.85
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.21
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.27
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.03
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	127.03
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.92
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	92.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.56
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.68
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	68.57
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	179.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	161.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	149.39
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	141.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	133.91
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	132.88
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	131.47
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	123.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.09
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	111.49
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	90.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.98
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	83.31
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.30
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	216.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	190.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	100.14
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.39
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	79.96
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	75.77
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.26
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	66.93
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.53
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.78
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.90
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	266.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	253.86
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	219.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	214.38
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	200.92
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	194.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	194.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	155.54
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	153.09
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	117.62

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.