Gene detail

Detailed information of OS493_016989-T1 in Lophelia pertusa

Genomic Location: scaffold_53:1816271...1821759
NR annotation: KAJ7360357.1, Kynurenine--oxoglutarate transaminase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0P5G4	Kynurenine--oxoglutarate transaminase 3 OS=Bos taurus OX=9913 GN=KYAT3 PE=2 SV=1
Q6YP21	Kynurenine--oxoglutarate transaminase 3 OS=Homo sapiens OX=9606 GN=KYAT3 PE=1 SV=1
Q71RI9	Kynurenine--oxoglutarate transaminase 3 OS=Mus musculus OX=10090 GN=Kyat3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002802 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051326 all species →	Family	Kynurenine--oxoglutarate transaminase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43807 all species →	FI04487P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016212 all species →	Molecular Function	kynurenine-oxoglutarate transaminase activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016989-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016989-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

168.9Max TPM

64.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	49.94	84.33
polyp at pH7 6	18	18	54.75	78.47
coral polyp · control treatment	16	16	78.08	168.87
coral polyp · oil and dispersant treatment	16	16	78.86	136.39
coral polyp · oil treatment	16	16	69.67	128.80
coral polyp · dispersant treatment	16	16	63.94	124.10
Polyp	10	10	57.66	159.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.33
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.76
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	62.03
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	61.64
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.48
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	57.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	55.80
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.57
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.86
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.82
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.72
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.03
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.13
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.51
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.52
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	78.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.08
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	75.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	69.82
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.97
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	60.87
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	58.76
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.76
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.41
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.26
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.72
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.43
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.90
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.37
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.34
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	168.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	122.03
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	113.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	111.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	108.01
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.28
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	64.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.81
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.46
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.19
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	115.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	111.29
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	99.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	85.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	80.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.73
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.14
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.78
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.25
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.25
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	47.67
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.91
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.11
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	89.37
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	86.97
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.68
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	79.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.74
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.28
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.67
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.18
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.13
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.53
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	124.10
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.83
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	72.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	70.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	69.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.15
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	62.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.52
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.49
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.16
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.77
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.74
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.95
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	159.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	137.44
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	48.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	45.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	44.39
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	37.05
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	36.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	36.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.33
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.63

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.