Gene detail

Detailed information of OS493_016990-T1 in Lophelia pertusa

Genomic Location: scaffold_53:1821819...1824807
NR annotation: KAJ7360358.1, Kynurenine--oxoglutarate transaminase 3 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q17CS8	Kynurenine aminotransferase OS=Aedes aegypti OX=7159 GN=KAT PE=1 SV=1
Q7T3E5	Kynurenine--oxoglutarate transaminase 3 OS=Danio rerio OX=7955 GN=kyat3 PE=2 SV=2
Q6YP21	Kynurenine--oxoglutarate transaminase 3 OS=Homo sapiens OX=9606 GN=KYAT3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002868 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR051326 all species →	Family	Kynurenine--oxoglutarate transaminase	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43807 all species →	FI04487P	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0016212 all species →	Molecular Function	kynurenine-oxoglutarate transaminase activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_016990-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_016990-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

109.3Max TPM

41.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.61	38.94
polyp at pH7 6	18	18	27.94	48.01
coral polyp · control treatment	16	16	56.78	99.68
coral polyp · oil and dispersant treatment	16	16	52.68	76.25
coral polyp · oil treatment	16	16	45.74	100.39
coral polyp · dispersant treatment	16	16	51.41	109.25
Polyp	10	10	26.62	49.01

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.75
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.12
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.80
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.28
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.29
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.16
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.02
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.58
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.66
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.10
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.37
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.01
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.14
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.03
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.80
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.47
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.35
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.67
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.45
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.19
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	99.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.33
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	88.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.13
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	76.87
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.13
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.09
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.73
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.85
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.85
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.47
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	76.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	70.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	69.79
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.59
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.03
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	62.97
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	61.84
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	60.32
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.66
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.32
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	67.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.34
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.65
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.58
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.39
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.25
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.67
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.67
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.20
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.91
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.41
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.87
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.11
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.45
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.20
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.68
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.09
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.06
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	49.01
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	48.25
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	38.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	28.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.45
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	20.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	13.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.