Gene detail

Detailed information of OS493_017022-T1 in Lophelia pertusa

Genomic Location: scaffold_53:2176849...2190456
NR annotation: KAJ7360389.1, Adenylate kinase 8 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6P618	Adenylate kinase 8 OS=Xenopus tropicalis OX=8364 GN=ak8 PE=2 SV=1
Q96MA6	Adenylate kinase 8 OS=Homo sapiens OX=9606 GN=AK8 PE=1 SV=1
Q4R3W4	Adenylate kinase 8 OS=Macaca fascicularis OX=9541 GN=AK8 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006129 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00406 all species →	ADK	Adenylate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036193 all species →	Homologous_superfamily	Adenylate kinase, active site lid domain superfamily	Interproscan
IPR000850 all species →	Family	Adenylate kinase/UMP-CMP kinase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23359 all species →	NUCLEOTIDE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004017 all species →	Molecular Function	adenylate kinase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006139 all species →	Biological Process	nucleobase-containing compound metabolic process	Interproscan
GO:0019205 all species →	Molecular Function	nucleobase-containing compound kinase activity	Interproscan
GO:0004127 all species →	Molecular Function	(d)CMP kinase activity	Interproscan
GO:0004550 all species →	Molecular Function	nucleoside diphosphate kinase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006165 all species →	Biological Process	obsolete nucleoside diphosphate phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00939	adk, AK; adenylate kinase	EC:2.7.4.3	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017022-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

120.5Max TPM

15.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.08	18.59
polyp at pH7 6	18	18	11.41	17.12
coral polyp · control treatment	16	16	23.02	120.50
coral polyp · oil and dispersant treatment	16	16	17.50	114.55
coral polyp · oil treatment	16	16	16.81	37.43
coral polyp · dispersant treatment	16	16	9.89	21.39
Polyp	10	10	18.48	27.21

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.07
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.15
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.16
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.29
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.10
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.03
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.65
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.20
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.12
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.43
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.51
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.12
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.74
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.28
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.46
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.39
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.02
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	120.50
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.25
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.58
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.44
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.29
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.26
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.86
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.05
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.32
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.01
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.86
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.27
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.91
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.21
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.10
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.74
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.17
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.92
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.97
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.33
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.31
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.97
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.53
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.34
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	27.21
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.96
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	21.98
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.19
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	17.84
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.37
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.67
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.