Gene detail

Detailed information of OS493_017040-T1 in Lophelia pertusa

Genomic Location: scaffold_54:3724...4203
NR annotation: KAJ7333503.1, Protein phosphatase 1 regulatory subunit 3B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6GQ68	Protein phosphatase 1 regulatory subunit 3B-B OS=Xenopus laevis OX=8355 GN=ppp1r3b-b PE=2 SV=1
Q5BL87	Protein phosphatase 1 regulatory subunit 3B-A OS=Xenopus laevis OX=8355 GN=ppp1r3b-a PE=2 SV=1
Q86XI6	Protein phosphatase 1 regulatory subunit 3B OS=Homo sapiens OX=9606 GN=PPP1R3B PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000773 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03370 all species →	CBM_21	Carbohydrate/starch-binding module (family 21)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050782 all species →	Family	Protein phosphatase 1 regulatory subunit 3	Interproscan
IPR005036 all species →	Domain	CBM21 (carbohydrate binding type-21) domain	Interproscan
IPR038175 all species →	Homologous_superfamily	CBM21 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12307 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000164 all species →	Cellular Component	protein phosphatase type 1 complex	Interproscan
GO:0005979 all species →	Biological Process	regulation of glycogen biosynthetic process	Interproscan
GO:0008157 all species →	Molecular Function	protein phosphatase 1 binding	Interproscan
GO:2001069 all species →	Molecular Function	glycogen binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017040-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017040-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

77.1Max TPM

24.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.58	33.69
polyp at pH7 6	18	18	18.75	23.66
coral polyp · control treatment	16	16	28.83	47.28
coral polyp · oil and dispersant treatment	16	16	26.46	66.61
coral polyp · oil treatment	16	16	21.28	33.04
coral polyp · dispersant treatment	16	16	38.68	77.09
Polyp	10	10	21.38	29.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.72
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.67
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.73
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.58
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.40
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.39
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.68
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.09
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.36
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.31
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.40
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.26
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.72
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.28
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.24
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.84
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.56
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.25
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.40
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.29
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.61
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.97
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.50
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.57
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.44
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.99
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.80
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.44
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.94
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.52
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	33.04
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.92
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.65
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.57
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.35
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.59
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.59
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.39
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.09
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.22
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	47.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.58
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.01
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.61
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.01
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.43
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	29.44
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	26.13
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.78
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.41
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	19.16
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	15.90
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	15.79
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	14.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.