Detailed information of OS493_017041-T1 in Lophelia pertusa

Genomic Location: scaffold_54:6959...13798
NR annotation: KAJ7333504.1, DNA replication complex GINS protein SLD5 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q99LZ3DNA replication complex GINS protein SLD5 OS=Mus musculus OX=10090 GN=Gins4 PE=1 SV=1
Q499W2DNA replication complex GINS protein SLD5 OS=Rattus norvegicus OX=10116 GN=Gins4 PE=1 SV=1
A2VE40DNA replication complex GINS protein SLD5 OS=Bos taurus OX=9913 GN=GINS4 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0007052 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05916
all species →		Sld5GINS complex proteinFamilyInterproscan
PF16922
all species →		SLD5_CDNA replication complex GINS protein SLD5 C-terminusDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR038749
all species →		DomainGINS complex protein Sld5, alpha-helical domainInterproscan
IPR021151
all species →		DomainGINS subunit, domain AInterproscan
IPR031633
all species →		DomainDNA replication complex GINS protein SLD5, C-terminalInterproscan
IPR036224
all species →		Homologous_superfamilyGINS, helical bundle-like domain superfamilyInterproscan
IPR008591
all species →		FamilyGINS complex subunit Sld5Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR21206
all species →		SLD5 PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006261
all species →		Biological ProcessDNA-templated DNA replicationInterproscan
GO:0000727
all species →		Biological Processdouble-strand break repair via break-induced replicationInterproscan
GO:0000811
all species →		Cellular ComponentGINS complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10735GINS4, SLD5; GINS complex subunit 4-DNA replication proteinsko03032deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_017041-T1 global co-expression network
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