Gene detail

Detailed information of OS493_017047-T1 in Lophelia pertusa

Genomic Location: scaffold_54:102024...105362
NR annotation: KAJ7333510.1, 5'-nucleotidase domain-containing protein [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004836 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05761 all species →	5_nucleotid	5' nucleotidase family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008380 all species →	Family	HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase	Interproscan
IPR036412 all species →	Homologous_superfamily	HAD-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12103 all species →	5'-NUCLEOTIDASE DOMAIN-CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008253 all species →	Molecular Function	5'-nucleotidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017047-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017047-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

91TPM > 0

7Conditions

7.8Max TPM

2.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	12	2.23	5.53
polyp at pH7 6	18	13	2.70	7.54
coral polyp · control treatment	16	14	3.95	7.81
coral polyp · oil and dispersant treatment	16	15	2.41	4.80
coral polyp · oil treatment	16	16	3.48	5.95
coral polyp · dispersant treatment	16	14	2.62	6.56
Polyp	10	7	1.44	3.42

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.80
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.45
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.40
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.87
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.79
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.53
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.86
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.07
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.99
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.91
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.97
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.05
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.19
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.00
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.57
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.11
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.91
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.59
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.95
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.94
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.77
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.34
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.98
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.82
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.39
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.83
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.21
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.19
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.38
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.23
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.21
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.79
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.42
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.77
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.45
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.