Gene detail

Detailed information of OS493_017056-T1 in Lophelia pertusa

Genomic Location: scaffold_54:178254...191291
NR annotation: KAJ7333519.1, Adducin 3 (Gamma) [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q63028	Alpha-adducin OS=Rattus norvegicus OX=10116 GN=Add1 PE=1 SV=2
Q9QYC0	Alpha-adducin OS=Mus musculus OX=10090 GN=Add1 PE=1 SV=2
P35611	Alpha-adducin OS=Homo sapiens OX=9606 GN=ADD1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002623 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00596 all species →	Aldolase_II	Class II Aldolase and Adducin N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036409 all species →	Homologous_superfamily	Class II aldolase/adducin N-terminal domain superfamily	Interproscan
IPR051017 all species →	Family	Aldolase class II Adducin subfamily	Interproscan
IPR001303 all species →	Domain	Class II aldolase/adducin N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10672 all species →	ADDUCIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005856 all species →	Cellular Component	cytoskeleton	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0014069 all species →	Cellular Component	postsynaptic density	Interproscan
GO:0051015 all species →	Molecular Function	actin filament binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017056-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017056-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

337.0Max TPM

178.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	189.25	239.95
polyp at pH7 6	18	18	191.75	284.31
coral polyp · control treatment	16	16	199.07	336.99
coral polyp · oil and dispersant treatment	16	16	198.07	295.33
coral polyp · oil treatment	16	16	196.34	300.44
coral polyp · dispersant treatment	16	16	149.72	231.87
Polyp	10	10	91.03	137.56

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	239.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	234.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	232.54
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	228.57
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	226.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	225.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	205.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	199.85
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	185.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	182.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	181.72
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	180.24
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.92
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	169.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.80
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	161.88
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	111.02
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	107.48
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	284.31
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	279.68
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	229.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	228.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	227.00
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	226.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	224.31
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	222.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	221.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	218.73
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	174.09
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	155.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	155.33
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	141.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	139.50
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	79.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.99
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	336.99
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	285.84
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	282.04
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	267.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	249.61
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	227.79
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	226.35
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	205.67
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.13
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	176.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	172.18
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	156.91
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	146.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.62
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.39
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	295.33
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	282.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	270.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	264.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	251.26
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	238.69
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	223.27
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	220.11
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	217.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.18
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	141.34
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	135.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	134.29
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	123.96
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.85
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	67.44
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	300.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	300.28
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	297.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	290.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	264.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	253.94
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	243.63
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	242.49
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	173.91
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	165.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	141.96
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	135.62
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.75
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	107.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.38
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	231.87
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	225.99
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	205.85
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	201.80
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	198.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	189.85
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	186.81
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.64
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.18
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	140.97
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.34
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.84
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	137.56
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	130.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	126.46
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	126.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	94.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	89.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	75.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	69.28
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	31.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	29.22

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.