Gene detail

Detailed information of OS493_017091-T1 in Lophelia pertusa

Genomic Location: scaffold_54:546803...548201
NR annotation: KAJ7333553.1, CDGSH iron-sulfur domain-containing protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B4MBU8	CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila virilis OX=7244 GN=Cisd2 PE=3 SV=1
B4NFN4	CDGSH iron-sulfur domain-containing protein 2 homolog OS=Drosophila willistoni OX=7260 GN=Cisd2 PE=3 SV=1
C4A0P0	CDGSH iron-sulfur domain-containing protein 2 homolog B OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_274541 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09360 all species →	zf-CDGSH	Iron-binding zinc finger CDGSH type	Domain	Interproscan
PF10660 all species →	MitoNEET_N	Iron-containing outer mitochondrial membrane protein N-terminus	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045131 all species →	Family	CDGSH iron-sulfur domain-containing protein 1/2	Interproscan
IPR018967 all species →	Domain	Iron-binding zinc finger, CDGSH type	Interproscan
IPR042216 all species →	Homologous_superfamily	MitoNEET, CDGSH iron-sulfur domain	Interproscan
IPR019610 all species →	Domain	Iron sulphur domain-containing, mitoNEET, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13680 all species →	CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0010506 all species →	Biological Process	regulation of autophagy	Interproscan
GO:0051537 all species →	Molecular Function	2 iron, 2 sulfur cluster binding	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017091-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017091-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

13.6Max TPM

4.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.89	10.05
polyp at pH7 6	18	17	4.80	10.85
coral polyp · control treatment	16	16	3.42	7.41
coral polyp · oil and dispersant treatment	16	15	2.04	4.83
coral polyp · oil treatment	16	16	3.95	6.01
coral polyp · dispersant treatment	16	16	2.92	13.57
Polyp	10	9	5.97	13.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.05
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.80
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.45
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.56
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.40
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.86
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.76
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.67
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.81
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.62
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.59
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.99
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.66
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.24
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.74
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.33
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.14
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.08
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.01
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.56
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.35
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.18
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.53
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.33
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.00
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.19
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.64
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.49
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.13
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.67
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.34
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.20
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.71
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.96
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.54
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.16
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.99
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	13.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.72
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.50
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.10
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.