Gene detail

Detailed information of OS493_017098-T1 in Lophelia pertusa

Genomic Location: scaffold_54:635955...639123
NR annotation: KAJ7333560.1, hypothetical protein OS493_017098 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5M9B7	Oligosaccharyltransferase complex subunit ostc-B OS=Xenopus laevis OX=8355 GN=ostc-b PE=2 SV=1
Q2KID7	Oligosaccharyltransferase complex subunit OSTC OS=Bos taurus OX=9913 GN=OSTC PE=2 SV=1
Q28IL7	Oligosaccharyltransferase complex subunit ostc OS=Xenopus tropicalis OX=8364 GN=ostc PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008818 (this species only) · gene tree & orthology

Pfam domain

No Pfam domain signature was recorded for OS493_017098-T1 in Lophelia pertusa.

InterPro

InterPro term	Type	Description	Source
IPR042416 all species →	Family	Oligosaccharyltransferase complex subunit OSTC	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13160 all species →	OLIGOSACCHARYLTRANSFERASE COMPLEX SUBUNIT OSTC	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006486 all species →	Biological Process	protein glycosylation	Interproscan
GO:0008250 all species →	Cellular Component	oligosaccharyltransferase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K26501	OSTC; oligosaccharyltransferase complex subunit OSTC	-	Protein processing in endoplasmic reticulum	ko04141	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017098-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,102.7Max TPM

572.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	836.70	1,021.70
polyp at pH7 6	18	18	768.82	938.31
coral polyp · control treatment	16	16	421.27	562.84
coral polyp · oil and dispersant treatment	16	16	344.06	463.05
coral polyp · oil treatment	16	16	467.00	664.38
coral polyp · dispersant treatment	16	16	310.81	565.53
Polyp	10	10	941.77	1,102.68

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,021.70
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,013.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,006.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,003.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	996.68
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	995.32
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	897.79
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	895.96
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	879.95
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	872.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	764.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	745.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	734.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	723.23
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	667.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	632.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	609.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	600.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	938.31
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	923.98
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	906.83
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	901.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	900.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	863.26
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	817.70
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	813.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	799.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	799.13
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	728.93
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	725.77
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	706.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	698.84
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	690.29
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	678.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	490.52
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	455.58
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	562.84
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	552.99
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	493.92
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	479.76
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	472.54
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	443.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	431.84
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	410.13
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	409.21
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	398.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	387.30
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	377.47
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	369.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	361.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	324.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	264.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	463.05
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	451.53
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	401.56
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	381.56
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	365.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	359.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	353.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	339.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	338.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	325.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	317.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	297.15
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	294.65
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	290.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	288.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	237.52
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	664.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	559.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	533.20
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	495.85
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	492.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	488.78
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	467.68
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	462.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	452.29
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	436.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	436.36
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	434.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	418.48
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	393.17
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	376.34
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	359.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	565.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	555.17
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	342.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	339.30
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	329.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	310.13
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	293.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	284.26
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	277.72
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	273.48
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	259.92
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	256.03
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	241.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	205.18
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	175.24
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1,102.68
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1,026.00
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	978.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	950.43
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	941.75
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	938.72
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	930.53
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	879.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	836.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	833.49

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.