Gene detail

Detailed information of OS493_017126-T1 in Lophelia pertusa

Genomic Location: scaffold_54:839979...844314
NR annotation: KAJ7333584.1, serine-type endopeptidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001971 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15913 all species →	Furin-like_2	Furin-like repeat, cysteine-rich	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR043601 all species →	Domain	R-spondin, Fu-CRD domain	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR006212 all species →	Repeat	Furin-like repeat	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051514 all species →	Family	R-spondin domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46987 all species →	NEUROHYPOPHYSIAL HORMONES, N-TERMINAL DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_017126-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017126-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017126-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

105TPM > 0

7Conditions

32.8Max TPM

8.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.25	6.32
polyp at pH7 6	18	15	3.42	7.92
coral polyp · control treatment	16	16	11.78	24.78
coral polyp · oil and dispersant treatment	16	16	11.08	20.46
coral polyp · oil treatment	16	16	9.11	23.23
coral polyp · dispersant treatment	16	16	12.93	32.81
Polyp	10	9	5.22	18.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.32
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.63
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.35
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.79
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.78
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.97
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.37
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.32
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.71
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.09
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.80
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.13
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.55
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.65
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.97
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.54
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.78
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.99
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.81
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.05
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.77
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.08
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.14
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.38
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.59
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.25
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.57
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.21
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.75
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.07
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.77
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.96
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.97
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.50
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.95
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.60
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.67
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.74
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.67
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.27
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.81
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.01
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.18
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.37
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.55
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.43
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.97
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.73
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.80
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.11
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	6.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.86
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.