Gene detail

Detailed information of OS493_017135-T1 in Lophelia pertusa

Genomic Location: scaffold_54:940628...943807
NR annotation: KAJ7333593.1, Transmembrane protein 72 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010067 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16054 all species →	TMEM72	Transmembrane protein family 72	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032055 all species →	Family	Transmembrane protein 72	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR28474 all species →	TRANSMEMBRANE PROTEIN 72	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_017135-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017135-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017135-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

24.3Max TPM

10.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	9.35	21.15
polyp at pH7 6	18	16	10.04	16.42
coral polyp · control treatment	16	16	12.17	19.58
coral polyp · oil and dispersant treatment	16	15	10.25	14.88
coral polyp · oil treatment	16	16	12.33	24.34
coral polyp · dispersant treatment	16	16	8.56	13.52
Polyp	10	9	7.77	14.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.15
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.34
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.88
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.73
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.59
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.41
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.50
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.85
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.42
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.82
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.83
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.51
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.42
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.77
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.96
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.50
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.98
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.54
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.27
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.16
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.88
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.14
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.80
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.38
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.19
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.38
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.54
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.84
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.34
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.77
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.19
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.77
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.89
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.83
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.35
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.70
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.13
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.87
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.81
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.52
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.70
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.68
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.64
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.63
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.15
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.85
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.94
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.04
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	14.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.55
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.14
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.06
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.89
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.98
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.