Gene detail

Detailed information of OS493_017152-T1 in Lophelia pertusa

Genomic Location: scaffold_54:1344550...1350862
NR annotation: KAJ7333609.1, Voltage-dependent anion-selective channel protein 2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P81004	Non-selective voltage-gated ion channel VDAC2 OS=Xenopus laevis OX=8355 GN=vdac2 PE=1 SV=1
P82013	Non-selective voltage-gated ion channel VDAC2 OS=Meleagris gallopavo OX=9103 GN=VDAC2 PE=1 SV=2
P45879	Non-selective voltage-gated ion channel VDAC1 OS=Bos taurus OX=9913 GN=VDAC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007562 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01459 all species →	Porin_3	Eukaryotic porin	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023614 all species →	Homologous_superfamily	Porin domain superfamily	Interproscan
IPR001925 all species →	Family	Porin, eukaryotic type	Interproscan
IPR027246 all species →	Family	Eukaryotic porin/Tom40	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11743 all species →	VOLTAGE-DEPENDENT ANION-SELECTIVE CHANNEL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005741 all species →	Cellular Component	mitochondrial outer membrane	Interproscan
GO:0008308 all species →	Molecular Function	voltage-gated monoatomic anion channel activity	Interproscan
GO:0098656 all species →	Biological Process	monoatomic anion transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017152-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017152-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,202.2Max TPM

663.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	738.26	886.56
polyp at pH7 6	18	18	791.99	941.49
coral polyp · control treatment	16	16	633.13	796.81
coral polyp · oil and dispersant treatment	16	16	616.42	869.52
coral polyp · oil treatment	16	16	609.85	679.21
coral polyp · dispersant treatment	16	16	452.77	827.28
Polyp	10	10	847.96	1,202.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	886.56
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	877.71
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	866.87
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	857.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	825.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	822.87
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	802.68
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	800.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	795.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	784.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	709.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	704.52
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	630.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	625.99
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	622.42
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	598.38
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	545.08
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	532.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	941.49
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	921.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	890.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	883.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	882.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	880.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	880.17
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	877.28
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	817.48
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	795.02
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	778.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	757.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	722.17
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	719.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	640.02
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	634.70
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	631.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	601.56
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	796.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	773.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	731.11
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	691.36
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	669.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	657.08
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	644.14
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	636.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	626.44
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	601.55
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	593.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	585.69
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	569.64
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	544.31
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	516.38
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	493.48
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	869.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	765.16
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	728.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	650.70
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	631.08
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	629.31
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	623.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	597.05
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	585.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	581.92
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	557.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	546.18
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	544.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	531.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	513.39
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	507.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	679.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	665.72
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	657.62
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	656.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	644.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	642.80
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	641.81
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	640.74
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	629.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	618.25
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	611.47
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	602.92
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	538.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	537.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	500.62
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	489.25
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	827.28
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	566.36
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	558.48
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	486.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	480.28
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	464.12
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	457.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	432.57
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	401.69
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	401.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	383.94
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	378.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	375.33
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	371.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	355.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	303.47
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,202.16
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,021.19
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	973.30
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	915.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	850.43
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	818.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	806.55
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	710.25
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	640.26
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	542.07

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.