Gene detail

Detailed information of OS493_017159-T1 in Lophelia pertusa

Genomic Location: scaffold_54:1404068...1413800
NR annotation: KAJ7333616.1, hypothetical protein OS493_017159 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O49923	Adenosine kinase OS=Physcomitrium patens OX=3218 GN=ADK PE=2 SV=1
Q9SF85	Adenosine kinase 1 OS=Arabidopsis thaliana OX=3702 GN=ADK1 PE=1 SV=1
P55262	Adenosine kinase OS=Cricetulus griseus OX=10029 GN=ADK PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004171 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00294 all species →	PfkB	pfkB family carbohydrate kinase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002173 all species →	Conserved_site	Carbohydrate/purine kinase, PfkB, conserved site	Interproscan
IPR001805 all species →	Family	Adenosine kinase	Interproscan
IPR011611 all species →	Domain	Carbohydrate kinase PfkB	Interproscan
IPR029056 all species →	Homologous_superfamily	Ribokinase-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45769 all species →	ADENOSINE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016301 all species →	Molecular Function	kinase activity	Interproscan
GO:0004001 all species →	Molecular Function	adenosine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006144 all species →	Biological Process	purine nucleobase metabolic process	Interproscan
GO:0006166 all species →	Biological Process	purine ribonucleoside salvage	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00856	ADK, adoK; adenosine kinase	EC:2.7.1.20	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017159-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,347.5Max TPM

420.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	454.34	759.30
polyp at pH7 6	18	18	512.65	911.42
coral polyp · control treatment	16	16	383.21	916.22
coral polyp · oil and dispersant treatment	16	16	326.25	716.52
coral polyp · oil treatment	16	16	415.05	905.88
coral polyp · dispersant treatment	16	16	316.65	954.44
Polyp	10	10	583.18	1,347.51

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	759.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	746.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	706.79
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	688.46
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	509.58
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	496.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	492.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	487.03
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	387.11
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	376.63
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.37
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	332.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	330.61
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	325.96
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	309.91
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	303.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	301.79
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	288.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	911.42
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	859.76
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	728.19
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	718.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	655.45
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	648.32
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	491.57
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	472.90
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	472.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	456.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	422.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	368.77
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	350.34
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	346.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	341.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	337.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	327.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	316.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	916.22
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	747.32
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	547.89
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	527.90
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	463.28
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	377.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	371.70
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	361.77
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	294.86
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	286.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	276.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	266.04
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	190.36
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	172.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	168.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	162.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	716.52
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	578.52
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	440.72
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	405.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	380.66
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	378.38
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	329.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	303.65
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	301.00
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	241.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	235.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	215.43
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	184.35
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	175.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.63
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.23
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	905.88
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	743.27
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	674.22
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	642.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	383.91
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	363.86
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	345.83
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	344.54
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	339.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	322.80
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	308.16
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	302.69
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	278.76
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	276.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.10
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	954.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	418.83
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	360.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	358.24
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	310.13
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	308.10
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	295.99
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	285.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	265.69
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	255.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	253.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	243.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	229.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	179.89
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	174.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	171.78
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1,347.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	875.09
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	636.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	602.26
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	539.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	473.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	396.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	393.54
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	391.97
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	176.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.