Gene detail

Detailed information of OS493_017169-T1 in Lophelia pertusa

Genomic Location: scaffold_54:1622059...1625720
NR annotation: KAJ7333626.1, Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q0VD50	Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 OS=Bos taurus OX=9913 GN=NMNAT1 PE=2 SV=1
Q9HAN9	Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 OS=Homo sapiens OX=9606 GN=NMNAT1 PE=1 SV=1
Q9EPA7	Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 OS=Mus musculus OX=10090 GN=Nmnat1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005768 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01467 all species →	CTP_transf_like	Cytidylyltransferase-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005248 all species →	Family	Nicotinate/nicotinamide nucleotide adenylyltransferase	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR051182 all species →	Family	Eukaryotic NMN adenylyltransferase	Interproscan
IPR004821 all species →	Domain	Cytidyltransferase-like domain	Interproscan
IPR045094 all species →	Family	Nicotinamide/nicotinate mononucleotide adenylyltransferase, eukaryotic	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12039 all species →	NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009435 all species →	Biological Process	NAD biosynthetic process	Interproscan
GO:0016779 all species →	Molecular Function	nucleotidyltransferase activity	Interproscan
GO:0000309 all species →	Molecular Function	nicotinamide-nucleotide adenylyltransferase activity	Interproscan
GO:0004515 all species →	Molecular Function	nicotinate-nucleotide adenylyltransferase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06210	NMNAT; nicotinamide mononucleotide adenylyltransferase	EC:2.7.7.1 EC:2.7.7.18	Nicotinate and nicotinamide metabolism	ko00760	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017169-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

34.3Max TPM

14.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.34	21.98
polyp at pH7 6	18	18	14.11	23.01
coral polyp · control treatment	16	16	20.48	34.26
coral polyp · oil and dispersant treatment	16	16	12.85	25.78
coral polyp · oil treatment	16	16	18.50	26.17
coral polyp · dispersant treatment	16	16	12.60	18.66
Polyp	10	9	9.31	16.85

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.98
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.76
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.99
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.04
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.31
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.11
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.74
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.46
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.11
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.71
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.91
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.29
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.18
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.51
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.40
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.12
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.35
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.46
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.83
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.52
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.34
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.62
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.87
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.39
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.26
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.72
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.03
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.75
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.95
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.30
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.78
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.29
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.91
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.34
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.52
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.88
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.26
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.29
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.93
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.05
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.83
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.53
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.66
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.13
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.43
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.45
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.95
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.62
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.61
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.83
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	13.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	10.82
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.90
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.