Gene detail

Detailed information of OS493_017171-T1 in Lophelia pertusa

Genomic Location: scaffold_54:1634769...1644149
NR annotation: KAJ7333628.1, nucleolar complex protein 14 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8R3N1	Nucleolar protein 14 OS=Mus musculus OX=10090 GN=Nop14 PE=1 SV=2
P78316	Nucleolar protein 14 OS=Homo sapiens OX=9606 GN=NOP14 PE=1 SV=3
O43051	Probable nucleolar complex protein 14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=nop14 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004573 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04147 all species →	Nop14	Nop14-like family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007276 all species →	Family	Nucleolar protein 14	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23183 all species →	NOP14	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0030490 all species →	Biological Process	maturation of SSU-rRNA	Interproscan
GO:0030692 all species →	Cellular Component	Noc4p-Nop14p complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017171-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017171-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

40.2Max TPM

13.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	13.38	18.93
polyp at pH7 6	18	18	16.69	26.53
coral polyp · control treatment	16	16	13.49	21.00
coral polyp · oil and dispersant treatment	16	16	9.18	22.20
coral polyp · oil treatment	16	16	12.14	19.23
coral polyp · dispersant treatment	16	16	8.90	18.65
Polyp	10	10	22.17	40.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.93
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.81
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.54
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.95
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.66
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.11
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.29
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.78
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.90
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.53
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.07
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.72
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.61
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.51
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.23
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.55
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.98
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.46
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.38
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.36
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.95
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.83
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.40
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.33
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.29
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.87
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.99
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.09
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.94
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.23
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.73
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.94
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.06
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.00
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.60
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.57
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.69
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.11
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.65
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.00
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.19
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.52
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.08
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.32
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	40.16
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	31.55
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	22.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	19.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	16.42
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	15.66
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.32

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.