Gene detail

Detailed information of OS493_017313-T1 in Lophelia pertusa

Genomic Location: scaffold_55:943661...952208
NR annotation: KAJ7391616.1, hypothetical protein OS493_017313 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17336	Catalase OS=Drosophila melanogaster OX=7227 GN=Cat PE=1 SV=2
Q64405	Catalase OS=Cavia porcellus OX=10141 GN=CAT PE=2 SV=4
P00432	Catalase OS=Bos taurus OX=9913 GN=CAT PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002414 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00199 all species →	Catalase	Catalase	Domain	Interproscan
PF06628 all species →	Catalase-rel	Catalase-related immune-responsive	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011614 all species →	Domain	Catalase core domain	Interproscan
IPR024711 all species →	Family	Catalase, mono-functional, haem-containing, clades 1 and 3	Interproscan
IPR018028 all species →	Family	Catalase, mono-functional, haem-containing	Interproscan
IPR020835 all species →	Homologous_superfamily	Catalase superfamily	Interproscan
IPR002226 all species →	Binding_site	Catalase haem-binding site	Interproscan
IPR040333 all species →	Family	Catalase, clade 3	Interproscan
IPR024708 all species →	Active_site	Catalase active site	Interproscan
IPR010582 all species →	Domain	Catalase immune-responsive domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11465 all species →	CATALASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004096 all species →	Molecular Function	catalase activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0042542 all species →	Biological Process	response to hydrogen peroxide	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03781	katE, CAT, catB, srpA; catalase	EC:1.11.1.6	Pathways of neurodegeneration - multiple diseases	ko05022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017313-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,026.1Max TPM

463.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	411.82	667.02
polyp at pH7 6	18	18	450.23	942.48
coral polyp · control treatment	16	16	548.93	902.76
coral polyp · oil and dispersant treatment	16	16	600.48	1,026.13
coral polyp · oil treatment	16	16	561.28	871.98
coral polyp · dispersant treatment	16	16	381.41	672.05
Polyp	10	10	196.71	430.16

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	667.02
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	658.17
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	529.88
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	519.17
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	466.34
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	458.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	437.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	423.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	393.88
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	386.32
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	335.37
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	323.33
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	321.68
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	307.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	305.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	296.24
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	291.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	291.30
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	942.48
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	927.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	574.25
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	571.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	411.01
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	410.50
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	407.69
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	401.54
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	394.72
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	391.62
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	355.11
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	353.83
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	344.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	342.63
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	322.95
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	320.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	317.46
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	313.76
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	902.76
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	773.89
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	769.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	689.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	687.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	648.55
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	573.08
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	521.16
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	513.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	487.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	408.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	402.76
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	398.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	368.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	336.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	302.71
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,026.13
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	890.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	715.56
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	701.65
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	678.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	672.58
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	657.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	622.11
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	601.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	541.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	491.10
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	486.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	458.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	393.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	367.21
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	303.44
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	871.98
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	753.58
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	699.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	667.10
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	661.38
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	648.58
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	619.74
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	588.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	547.38
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	506.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	479.29
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	439.09
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	430.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	429.10
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	329.74
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	308.43
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	672.05
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	555.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	454.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	421.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	421.20
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	420.67
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	413.94
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	399.74
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	394.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	331.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	313.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	304.13
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	301.72
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	262.15
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	246.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	188.65
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	430.16
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	299.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	245.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	233.85
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	200.04
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	188.31
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	167.40
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	147.51
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	34.27
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.40

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.