Gene detail

Detailed information of OS493_017326-T1 in Lophelia pertusa

Genomic Location: scaffold_55:1075971...1086424
NR annotation: KAJ7391629.1, hypothetical protein OS493_017326 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P17336	Catalase OS=Drosophila melanogaster OX=7227 GN=Cat PE=1 SV=2
P00432	Catalase OS=Bos taurus OX=9913 GN=CAT PE=1 SV=3
Q9PWF7	Catalase OS=Glandirana rugosa OX=8410 GN=cat PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002414 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00199 all species →	Catalase	Catalase	Domain	Interproscan
PF06628 all species →	Catalase-rel	Catalase-related immune-responsive	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR020835 all species →	Homologous_superfamily	Catalase superfamily	Interproscan
IPR018028 all species →	Family	Catalase, mono-functional, haem-containing	Interproscan
IPR002226 all species →	Binding_site	Catalase haem-binding site	Interproscan
IPR011614 all species →	Domain	Catalase core domain	Interproscan
IPR010582 all species →	Domain	Catalase immune-responsive domain	Interproscan
IPR024708 all species →	Active_site	Catalase active site	Interproscan
IPR040333 all species →	Family	Catalase, clade 3	Interproscan
IPR024711 all species →	Family	Catalase, mono-functional, haem-containing, clades 1 and 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11465 all species →	CATALASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0004096 all species →	Molecular Function	catalase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0005777 all species →	Cellular Component	peroxisome	Interproscan
GO:0042542 all species →	Biological Process	response to hydrogen peroxide	Interproscan
GO:0042744 all species →	Biological Process	hydrogen peroxide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03781	katE, CAT, catB, srpA; catalase	EC:1.11.1.6	Pathways of neurodegeneration - multiple diseases	ko05022	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017326-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

3,159.9Max TPM

1,268.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	760.34	1,200.35
polyp at pH7 6	18	18	1,015.63	1,486.88
coral polyp · control treatment	16	16	1,268.48	2,651.78
coral polyp · oil and dispersant treatment	16	16	2,000.47	3,159.89
coral polyp · oil treatment	16	16	1,167.30	1,527.68
coral polyp · dispersant treatment	16	16	1,662.71	2,910.47
Polyp	10	10	1,003.25	1,848.98

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,200.35
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,180.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	970.25
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	964.74
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	754.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	733.14
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	710.32
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	710.24
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	694.72
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	690.67
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	688.67
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	682.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	669.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	661.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	608.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	604.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	581.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	579.20
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,486.88
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,475.10
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,372.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,367.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,229.47
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,226.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,184.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,173.85
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	924.25
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	910.02
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	847.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	839.19
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	834.24
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	829.46
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	673.71
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	666.32
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	629.87
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	610.78
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,651.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,366.11
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,823.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,438.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,407.77
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,376.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,250.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,190.90
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,167.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,067.45
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,040.27
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	889.47
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	826.30
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	769.14
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	739.66
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	289.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,159.89
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,816.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,673.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,408.46
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,357.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,345.11
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,273.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,193.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,153.75
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,055.46
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,629.07
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,584.72
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,439.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,208.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,114.07
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	593.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,527.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,506.06
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,458.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,435.99
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,338.22
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,299.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,279.80
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,279.67
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,148.39
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,112.28
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,104.51
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1,005.08
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	816.87
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	815.96
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	791.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	756.72
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,910.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,781.83
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,084.53
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,011.70
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,004.47
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,891.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,842.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,578.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,536.29
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,486.87
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,467.66
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,135.40
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,072.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,050.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	888.83
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	860.13
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1,848.98
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1,434.39
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1,273.70
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1,162.41
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	1,048.36
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	988.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	769.13
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	628.64
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	535.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	342.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.