Gene detail

Detailed information of OS493_017354-T1 in Lophelia pertusa

Genomic Location: scaffold_55:1454450...1457830
NR annotation: KAJ7391657.1, hypothetical protein OS493_017354 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001088 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04706 all species →	Dickkopf_N	Dickkopf N-terminal cysteine-rich region	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006796 all species →	Domain	Dickkopf, N-terminal cysteine-rich	Interproscan
IPR039863 all species →	Family	Dickkopf related protein 1-4	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12113 all species →	DICKKOPF3-LIKE 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0030178 all species →	Biological Process	negative regulation of Wnt signaling pathway	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan
GO:0039706 all species →	Molecular Function	co-receptor binding	Interproscan
GO:0048019 all species →	Molecular Function	receptor antagonist activity	Interproscan
GO:0090090 all species →	Biological Process	negative regulation of canonical Wnt signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017354-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017354-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

18.4Max TPM

3.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.29	7.34
polyp at pH7 6	18	15	5.21	18.36
coral polyp · control treatment	16	16	4.46	9.91
coral polyp · oil and dispersant treatment	16	15	2.80	6.55
coral polyp · oil treatment	16	16	5.26	15.15
coral polyp · dispersant treatment	16	15	1.82	4.25
Polyp	10	7	0.74	3.67

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.68
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.44
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.18
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.06
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.67
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.77
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.42
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.36
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.05
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.95
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.49
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.60
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.87
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.91
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.79
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.64
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.95
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.73
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.80
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.63
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.32
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.86
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.04
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.54
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.55
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.71
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.34
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.73
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.15
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.23
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.38
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.07
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.59
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.31
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.44
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.20
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.99
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.34
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.80
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.35
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.33
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.67
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.16
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.80
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.52
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.61
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.59
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	0.53
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.