Gene detail

Detailed information of OS493_017392-T1 in Lophelia pertusa

Genomic Location: scaffold_55:1922751...1929204
NR annotation: KAJ7391695.1, hypothetical protein OS493_017392 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9TTS3	Acetyl-CoA carboxylase 1 OS=Bos taurus OX=9913 GN=ACACA PE=2 SV=1
Q28559	Acetyl-CoA carboxylase 1 OS=Ovis aries OX=9940 GN=ACACA PE=2 SV=1
P11029	Acetyl-CoA carboxylase OS=Gallus gallus OX=9031 GN=ACAC PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002191 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01039 all species →	Carboxyl_trans	Carboxyl transferase domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011763 all species →	Domain	Acetyl-coenzyme A carboxyltransferase, C-terminal	Interproscan
IPR049076 all species →	Family	Acetyl-CoA carboxylase	Interproscan
IPR034733 all species →	Domain	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta	Interproscan
IPR029045 all species →	Homologous_superfamily	ClpP/crotonase-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45728 all species →	ACETYL-COA CARBOXYLASE, ISOFORM A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016874 all species →	Molecular Function	ligase activity	Interproscan
GO:0003989 all species →	Molecular Function	acetyl-CoA carboxylase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006633 all species →	Biological Process	fatty acid biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_017392-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_017392-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

40.6Max TPM

21.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	25.60	35.92
polyp at pH7 6	18	18	25.18	32.45
coral polyp · control treatment	16	16	26.50	40.64
coral polyp · oil and dispersant treatment	16	16	16.37	28.75
coral polyp · oil treatment	16	16	21.61	37.86
coral polyp · dispersant treatment	16	16	17.66	30.16
Polyp	10	10	13.42	23.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.92
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.66
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.92
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.90
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.76
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.91
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.54
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.39
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.73
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.19
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.71
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.71
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.23
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.20
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.45
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.40
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.76
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.05
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.76
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.30
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.14
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.25
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.20
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.64
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.22
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.90
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.12
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.25
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.84
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.61
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.45
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.04
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.75
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.56
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.83
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.84
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.58
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.20
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.28
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.26
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.04
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.47
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.86
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.89
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.73
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.71
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.71
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.47
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.95
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.98
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.16
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.75
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.27
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.04
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.25
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.40
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.60
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.06
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.36
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	23.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	20.38
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.91
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	18.88
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	8.62
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	8.29
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	6.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	5.66
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.66

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.