Detailed information of OS493_017426-T1 in Lophelia pertusa

Genomic Location: scaffold_55:2326337...2339827
NR annotation: KAJ7391728.1, protein-lysine 6-oxidase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q924C6Lysyl oxidase homolog 4 OS=Mus musculus OX=10090 GN=Loxl4 PE=2 SV=2
A1L1V4Lysyl oxidase homolog 2B OS=Danio rerio OX=7955 GN=loxl2b PE=2 SV=1
F1QQC3Lysyl oxidase homolog 2A OS=Danio rerio OX=7955 GN=loxl2a PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001610 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00040
all species →		fn2Fibronectin type II domainDomainInterproscan
PF01186
all species →		Lysyl_oxidaseLysyl oxidase FamilyInterproscan
PF00530
all species →		SRCRScavenger receptor cysteine-rich domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001190
all species →		DomainSRCR domainInterproscan
IPR000562
all species →		DomainFibronectin type II domainInterproscan
IPR050912
all species →		FamilyLysyl oxidase-like proteinInterproscan
IPR013806
all species →		Homologous_superfamilyKringle-like foldInterproscan
IPR017448
all species →		DomainSRCR-like domainInterproscan
IPR001695
all species →		FamilyLysyl oxidaseInterproscan
IPR036943
all species →		Homologous_superfamilyFibronectin type II domain superfamilyInterproscan
IPR019828
all species →		Conserved_siteLysyl oxidase, conserved siteInterproscan
IPR036772
all species →		Homologous_superfamilySRCR-like domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45817
all species →		LYSYL OXIDASE-LIKE-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0016020
all species →		Cellular ComponentmembraneInterproscan
GO:0004720
all species →		Molecular Functionprotein-lysine 6-oxidase activityInterproscan
GO:0005615
all species →		Cellular Componentextracellular spaceInterproscan
GO:0018057
all species →		Biological Processpeptidyl-lysine oxidationInterproscan
GO:0005507
all species →		Molecular Functioncopper ion bindingInterproscan
GO:0016641
all species →		Molecular Functionoxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptorInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_017426-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_017426-T1 global co-expression network
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