Detailed information of OS493_017443-T1 in Lophelia pertusa

Genomic Location: scaffold_56:199379...201121
NR annotation: KAJ7385078.1, Sterol regulatory element-binding protein 2 [Desmophyllum pertusum]
Species abbreviation LPERT · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
A3KNA7Sterol regulatory element-binding protein 2 OS=Danio rerio OX=7955 GN=srebf2 PE=1 SV=1
Q6GQ26Sterol regulatory element-binding protein 2 OS=Xenopus laevis OX=8355 GN=srebf2 PE=2 SV=1
Q3U1N2Sterol regulatory element-binding protein 2 OS=Mus musculus OX=10090 GN=Srebf2 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005329 (this species only)

 Pfam domain
No Pfam domain signature was detected for OS493_017443-T1. This gene does have a gene model — the search simply returned no hit.
 InterPro
No InterPro signature was detected for OS493_017443-T1. This gene does have a gene model — the search simply returned no hit.
 PANTHER
PANTHER termDescriptionSource
PTHR46062
all species →		STEROL REGULATORY ELEMENT-BINDING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000978
all species →		Molecular FunctionRNA polymerase II cis-regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_017443-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_017443-T1 global co-expression network
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